EnhancerDB
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  3. rs78125548[chr17:39012547]
Enhancers that have rs78125548[chr17:39012547]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39001145 39015955 enh17144
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Colon (HCT116) Uterus Lung (PC-9) Breast Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr17 39012522 39012675 vista24759
VISTA
Transcript factors that have rs78125548[chr17:39012547]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39011964 39012988 ZBTB33 GTRD no Lung (A549) 108257905
chr17 39011983 39012890 ZBTB33 GTRD no Lung (A549) 108257906
chr17 39011992 39012774 ZNF274 GTRD no Liver (HepG2) 108257907
chr17 39012012 39012684 ZNF274 GTRD no Liver (HepG2) 108257908
chr17 39012072 39012702 ZBTB33 GTRD no Lung (A549) 108257909
chr17 39012097 39012649 ZNF143 GTRD no Epithelial (MCF-7) 21756993
chr17 39012097 39012649 ZNF143 GTRD no Epithelial (MCF-7) 108257910
chr17 39012172 39012598 ZNF143 GTRD no Epithelial (MCF-7) 21756995
chr17 39012172 39012598 ZNF143 GTRD no Epithelial (MCF-7) 108257913
chr17 39012174 39012688 TCF7L2 GTRD no Colon (HCT116) 21756996
chr17 39012174 39012688 TCF7L2 GTRD no Colon (HCT116) 108257914
chr17 39012187 39012601 ZNF143 GTRD no Epithelial (MCF-7) 21756997
chr17 39012187 39012601 ZNF143 GTRD no Epithelial (MCF-7) 108257915
chr17 39012197 39012625 ZNF274 GTRD no Bone Marrow (K562) 108257916
chr17 39012257 39012691 ZNF143 GTRD no Epithelial (MCF-7) 21756999
chr17 39012257 39012691 ZNF143 GTRD no Epithelial (MCF-7) 108257918
chr17 39012280 39012609 ZNF274 GTRD no Liver (HepG2) 108257919
chr17 39012303 39012582 ZNF274 GTRD no Liver (HepG2) 108257920
chr17 39012538 39012548 HMBOX1 JASPAR yes 21237299
chr17 39012538 39012548 HMBOX1 JASPAR yes 54241154
chr17 39012539 39012551 GRHL1 JASPAR yes 21237300
chr17 39012539 39012551 GRHL1 JASPAR yes 54241155
Genes associated with rs78125548[chr17:39012547], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More