EnhancerDB
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  3. rs78553368[chr12:125198035]
Enhancers that have rs78553368[chr12:125198035]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125197556 125198099 vista15323
VISTA
Transcript factors that have rs78553368[chr12:125198035]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125197570 125198100 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582173
chr12 125197570 125198100 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069551
chr12 125197587 125198103 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582175
chr12 125197587 125198103 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069553
chr12 125197764 125198164 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582176
chr12 125197764 125198164 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069554
chr12 125198030 125198046 GLIS1 JASPAR yes 82497495
chr12 125198030 125198046 GLIS1 JASPAR yes 124412347
chr12 125198031 125198045 GLIS2 JASPAR yes 82497496
chr12 125198031 125198045 GLIS2 JASPAR yes 124412348
Genes associated with rs78553368[chr12:125198035], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More