EnhancerDB
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  3. rs78707393[chr12:109230154]
Enhancers that have rs78707393[chr12:109230154]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109230004 109245900 enh14979
Bone Marrow (K562) Brain (SK-N-MC) Adrenal Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs78707393[chr12:109230154]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109230137 109230155 IRF2 JASPAR yes 123625114
chr12 109230138 109230159 IRF1 JASPAR yes 123625115
chr12 109230140 109230155 PRDM1 JASPAR yes 123625116
chr12 109230140 109230155 STAT2 JASPAR yes 123625117
chr12 109230141 109230155 STAT1 JASPAR yes 123625118
chr12 109230142 109230156 IRF7 JASPAR yes 123625119
chr12 109230142 109230156 IRF8 JASPAR yes 123625120
chr12 109230142 109230157 IRF9 JASPAR yes 123625121
chr12 109230148 109230158 NFATC3 JASPAR yes 123625123
chr12 109230149 109230156 NFATC2 JASPAR yes 123625124
Genes associated with rs78707393[chr12:109230154], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More