EnhancerDB
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  3. rs78790020[chr12:125224492]
Enhancers that have rs78790020[chr12:125224492]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs78790020[chr12:125224492]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125224232 125225149 SETDB1 UCSC Txn Factor no Conserved 108069704
chr12 125224412 125224828 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21582523
chr12 125224412 125224828 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108069705
chr12 125224437 125224821 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582524
chr12 125224437 125224821 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108069706
chr12 125224480 125224498 RARA JASPAR yes 124415961
chr12 125224481 125224496 ESR2 JASPAR yes 124415962
Genes associated with rs78790020[chr12:125224492], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More