EnhancerDB
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  3. rs78891266[chr1:230280854]
Enhancers that have rs78891266[chr1:230280854]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 230280348 230284066 vista144
VISTA
Transcript factors that have rs78891266[chr1:230280854]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230280843 230280856 SMAD2 JASPAR yes 36026273
chr1 230280843 230280856 SMAD2 JASPAR yes 71160898
chr1 230280850 230280861 BATF JASPAR yes 36026274
chr1 230280850 230280861 BATF JASPAR yes 71160899
Genes associated with rs78891266[chr1:230280854], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 229566992 229569845 - ACTA1 ENSG00000143632.10 229569845 711009 Esophagus 0.282134 1932