EnhancerDB
  1. Home
  2. SNP
  3. rs796623716[chr12:53955113]
Enhancers that have rs796623716[chr12:53955113]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs796623716[chr12:53955113]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 21549439
chr12 53954615 53955949 TCF7L2 GTRD no Colon (HCT116) 108036194
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 21549440
chr12 53954676 53955824 ZNF143 GTRD no Epithelial (MCF-7) 108036195
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 21549441
chr12 53954690 53955642 ZNF143 GTRD no Epithelial (MCF-7) 108036196
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 21549442
chr12 53954900 53955903 TCF7L2 GTRD no Colon (HCT116) 108036197
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 21549443
chr12 53955006 53955502 TCF7L2 GTRD no Colon (HCT116) 108036198
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 21549444
chr12 53955028 53955486 TCF7L2 GTRD no Colon (HCT116) 108036199
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 21549445
chr12 53955050 53955528 TCF7L2 GTRD no Colon (HCT116) 108036200
chr12 53955110 53955125 FOXP1 JASPAR yes 120990882
chr12 53955111 53955126 FOXP1 JASPAR yes 120990883
chr12 53955112 53955118 TBP TRANSFAC yes 120990884
chr12 53955112 53955127 FOXP1 JASPAR yes 120990885
chr12 53955112 53955133 IRF1 JASPAR yes 120990886
chr12 53955113 53955128 FOXP1 JASPAR yes 120990887
chr12 53955113 53955134 IRF1 JASPAR yes 120990888
Genes associated with rs796623716[chr12:53955113], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More