EnhancerDB
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  3. rs79939678[chr1:226845143]
Enhancers that have rs79939678[chr1:226845143]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs79939678[chr1:226845143]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226845128 226845143 LEF1 JASPAR yes 35828615
chr1 226845142 226845157 LEF1 JASPAR yes 35828616
chr1 226845143 226845157 GATA2 JASPAR yes 35828617
chr1 226845143 226845157 TCF7L2 JASPAR yes 35828618
Genes associated with rs79939678[chr1:226845143], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More