EnhancerDB
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  3. rs80197619[chr1:171409046]
Enhancers that have rs80197619[chr1:171409046]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs80197619[chr1:171409046]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171409045 171409054 SNAI2 JASPAR yes 33081292
chr1 171409045 171409055 FIGLA JASPAR yes 33081293
chr1 171409045 171409055 ID4 JASPAR yes 33081294
chr1 171409045 171409055 TCF3 JASPAR yes 33081295
chr1 171409045 171409055 TCF4 JASPAR yes 33081296
Genes associated with rs80197619[chr1:171409046], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More