EnhancerDB
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  3. rs8055447[chr16:88825848]
Enhancers that have rs8055447[chr16:88825848]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs8055447[chr16:88825848]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88823154 88827493 TCF7L2 GTRD no Colon (HCT116) 21736869
chr16 88823154 88827493 TCF7L2 GTRD no Colon (HCT116) 108223300
chr16 88823627 88827542 TCF7L2 GTRD no Colon (HCT116) 21736870
chr16 88823627 88827542 TCF7L2 GTRD no Colon (HCT116) 108223301
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 21736871
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 108223302
chr16 88825512 88827616 ZNF143 GTRD no Epithelial (MCF-7) 21736872
chr16 88825512 88827616 ZNF143 GTRD no Epithelial (MCF-7) 108223303
chr16 88825532 88829851 POLR2A UCSC Txn Factor no Conserved 108223304
chr16 88825564 88827599 ZNF143 GTRD no Epithelial (MCF-7) 21736873
chr16 88825564 88827599 ZNF143 GTRD no Epithelial (MCF-7) 108223305
chr16 88825575 88827571 ZNF143 GTRD no Epithelial (MCF-7) 21736874
chr16 88825575 88827571 ZNF143 GTRD no Epithelial (MCF-7) 108223306
chr16 88825699 88826980 AR GTRD no Prostate (PC-3) 21736875
chr16 88825699 88826980 AR GTRD no Prostate (PC-3) 108223307
chr16 88825833 88825850 RARA JASPAR yes 12300641
chr16 88825834 88825855 ZNF263 JASPAR yes 12300643
chr16 88825835 88825850 TFAP2C JASPAR yes 12300644
chr16 88825837 88825849 INSM1 JASPAR yes 12300645
Genes associated with rs8055447[chr16:88825848], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr16 89627065 89630950 + RPL13 ENSG00000167526.9 89627065 801217 Liver 0.257188 15178