EnhancerDB
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  3. rs838939[chr12:125184454]
Enhancers that have rs838939[chr12:125184454]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs838939[chr12:125184454]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125182375 125184849 ZBTB33 GTRD no Lung (A549) 21581819
chr12 125183878 125184943 ZNF274 GTRD no Blood (GM12878) 21581966
chr12 125184436 125184952 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21581967
chr12 125184437 125184455 NFYA JASPAR yes 124410449
chr12 125184445 125184456 E2F1 JASPAR yes 124410453
chr12 125184446 125184457 E2F4 JASPAR yes 124410454
chr12 125184446 125184457 E2F6 JASPAR yes 124410455
Genes associated with rs838939[chr12:125184454], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More