EnhancerDB
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  3. rs927729[chr1:236084124]
Enhancers that have rs927729[chr1:236084124]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 236062005 236089295 enh12805
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs927729[chr1:236084124]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 236083438 236084808 P63 GTRD no Skin (Keratinocyte) 21403934
chr1 236083438 236084808 P63 GTRD no Skin (Keratinocyte) 107886258
chr1 236083442 236084742 P63 GTRD no Skin (Keratinocyte) 21403936
chr1 236083442 236084742 P63 GTRD no Skin (Keratinocyte) 107886261
chr1 236083505 236084593 P63 GTRD no Skin (Keratinocyte) 21403939
chr1 236083505 236084593 P63 GTRD no Skin (Keratinocyte) 107886266
chr1 236083526 236084440 P63 GTRD no Skin (Keratinocyte) 21403940
chr1 236083526 236084440 P63 GTRD no Skin (Keratinocyte) 107886267
chr1 236083617 236084403 ZBTB33 GTRD no Brain (SK-N-SH) 21403942
chr1 236083617 236084403 ZBTB33 GTRD no Brain (SK-N-SH) 107886269
chr1 236083975 236084385 SOX2 GTRD no Neural Stem Cells (H9) 21403943
chr1 236084118 236084128 SREBF1 JASPAR yes 36388203
Genes associated with rs927729[chr1:236084124], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More