EnhancerDB
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  3. rs9435825[chr1:229359336]
Enhancers that have rs9435825[chr1:229359336]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs9435825[chr1:229359336]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229359180 229359710 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390813
chr1 229359186 229359702 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390814
chr1 229359233 229359737 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390815
chr1 229359269 229359725 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390816
chr1 229359296 229359766 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390817
chr1 229359299 229359669 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390818
chr1 229359307 229359703 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390819
chr1 229359327 229359348 IRF1 JASPAR yes 35976592
chr1 229359327 229359707 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390820
chr1 229359329 229359344 IRF9 JASPAR yes 35976593
chr1 229359330 229359590 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390821
chr1 229359331 229359345 STAT1 JASPAR yes 35976594
chr1 229359331 229359346 AR JASPAR yes 35976595
chr1 229359331 229359346 STAT2 JASPAR yes 35976596
chr1 229359332 229359344 IRF1 JASPAR yes 35976597
Genes associated with rs9435825[chr1:229359336], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 228645065 228645560 - HIST3H2A ENSG00000181218.4 228645560 713776 Esophagus 0.144141 1924