EnhancerDB
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  3. rs9953600[chr18:55936965]
Enhancers that have rs9953600[chr18:55936965]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55922865 55949275 enh17739
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs9953600[chr18:55936965]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55936954 55936973 RFX2 JASPAR yes 110934475
chr18 55936955 55936965 RELA JASPAR yes 110934476
chr18 55936958 55936974 RFX2 JASPAR yes 110934477
chr18 55936958 55936974 RFX3 JASPAR yes 110934478
chr18 55936958 55936974 RFX4 JASPAR yes 110934479
chr18 55936958 55936974 RFX5 JASPAR yes 110934480
chr18 55936959 55936978 RFX2 JASPAR yes 110934481
chr18 55936961 55936966 ETS2 TRANSFAC yes 110934482
Genes associated with rs9953600[chr18:55936965], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More