EnhancerDB
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  3. rs9965985[chr18:56206955]
Enhancers that have rs9965985[chr18:56206955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 56204885 56211735 enh4869
Liver Astrocyte Blood (Karpas-422) Blood (T-cell) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr18 56206749 56207237 vista27608
VISTA
Transcript factors that have rs9965985[chr18:56206955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 56201636 56207333 POLR2A UCSC Txn Factor no Conserved 108338393
chr18 56205684 56207229 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21824162
chr18 56205684 56207229 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338394
chr18 56206841 56207161 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21824163
chr18 56206841 56207161 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338395
chr18 56206853 56207117 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21824164
chr18 56206853 56207117 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338396
chr18 56206863 56207233 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21824165
chr18 56206863 56207233 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338397
chr18 56206921 56207197 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21824166
chr18 56206921 56207197 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108338398
chr18 56206937 56206955 RARA JASPAR yes 42715439
chr18 56206937 56206955 RARA JASPAR yes 110956681
chr18 56206953 56206957 LFA1 TRANSFAC yes 42715440
chr18 56206953 56206957 LFA1 TRANSFAC yes 110956682
Genes associated with rs9965985[chr18:56206955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr18 56148479 56296189 - ALPK2 ENSG00000198796.6 56296189 0 Heart 3.30601e-06 16612