EnhancerDB
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Enhancers that regulate LIG3[ENSG00000005156.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 33209680 33216075 enh91154 33307513 91438
Bone Marrow (K562)
chr17 33227345 33234615 enh104318 33307513 72898
Peripheral Blood (MM.1S)
chr17 33242565 33246715 enh96742 33307513 60798
Epithelial (MCF-7)
chr17 33299245 33303395 enh81202 33307513 4118
Prostate (PC-3)
chr17 33300552 33300861 vista24518 33307513 6652
VISTA
chr17 33343945 33348115 enh108664 33307513 36432
Stomach Lung (PC-9)
chr17 33349623 33350064 vista24519 33307513 42110
VISTA
chr17 33353605 33357819 enh62610 33307513 46092
Esophagus Prostate (PC-3) Lung (PC-9)
chr17 33370545 33387375 enh4366 33307513 63032
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Large Intestine Blood (T-cell) Esophagus Astrocyte Liver Blood (GM12878) Peripheral Blood (MM.1S) Uterus Blood (Karpas-422) Lung (PC-9) Pancreas Neural Stem Cells (H9) Thymus Stomach
chr17 33373543 33373969 vista24520 33307513 66030
VISTA
chr17 33378276 33378529 vista24521 33307513 70763
VISTA
chr17 33383216 33383365 vista24522 33307513 75703
VISTA
chr17 33391728 33395952 enh86243 33307513 84215
Colon (HCT116)
chr17 33391990 33392005 vista24523 33307513 84477
VISTA
chr17 33397545 33404635 enh81203 33307513 90032
Prostate (PC-3) Liver (HepG2) Lung (PC-9) Blood (T-cell) Stomach
chr17 33404685 33414376 enh4367 33307513 97172
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Brain (SK-N-SH) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Blood (T-cell) Epithelial (MCF-7)
Transcript facotrs that regulate LIG3[ENSG00000005156.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 33302544 33302565 MAFG JASPAR yes 33307513 4948 53988068
chr17 33302574 33302589 NFYB JASPAR yes 33307513 4924 53988069
chr17 33302576 33302592 NFYA JASPAR yes 33307513 4921 53988070
chr17 33302578 33302590 PBX1 JASPAR yes 33307513 4923 53988071
chr17 33302581 33302585 H1TF2 TRANSFAC yes 33307513 4928 53988072
chr17 33302581 33302585 NFE TRANSFAC yes 33307513 4928 53988073
chr17 33302581 33302585 SRF TRANSFAC yes 33307513 4928 53988074
chr17 33302601 33302617 SOX8 JASPAR yes 33307513 4896 53988075
chr17 33302620 33302631 DMRT3 JASPAR yes 33307513 4882 53988076
chr17 33302624 33302629 GATA2 JASPAR yes 33307513 4884 53988077
chr17 33302654 33302658 YY1 TRANSFAC yes 33307513 4855 53988078
chr17 33302659 33302664 MYB TRANSFAC yes 33307513 4849 53988079
chr17 33302671 33302679 ISL2 JASPAR yes 33307513 4834 53988080
chr17 33302671 33302680 NKX3-2 JASPAR yes 33307513 4833 53988081
chr17 33302674 33302683 NFIX JASPAR yes 33307513 4830 53988082
chr17 33302674 33302684 NFIA JASPAR yes 33307513 4829 53988083
chr17 33302676 33302682 NFIC JASPAR yes 33307513 4831 53988084
chr17 33302693 33302705 JDP2 JASPAR yes 33307513 4808 53988085
chr17 33302694 33302707 JUN JASPAR yes 33307513 4806 53988086
chr17 33302695 33302702 JUN TRANSFAC yes 33307513 4811 53988087
chr17 33302695 33302707 PKNOX1 JASPAR yes 33307513 4806 53988088
chr17 33302695 33302707 PKNOX2 JASPAR yes 33307513 4806 53988089
chr17 33302695 33302707 TGIF1 JASPAR yes 33307513 4806 53988090
chr17 33302695 33302707 TGIF2 JASPAR yes 33307513 4806 53988091
chr17 33302700 33302711 BATF JASPAR yes 33307513 4802 53988092
chr17 33302710 33302714 YY1 TRANSFAC yes 33307513 4799 53988093
chr17 33302711 33302721 HOXB13 JASPAR yes 33307513 4792 53988094
chr17 33302711 33302721 HOXD13 JASPAR yes 33307513 4792 53988095
chr17 33302712 33302722 ALX3 JASPAR yes 33307513 4791 53988096
chr17 33302712 33302722 ESX1 JASPAR yes 33307513 4791 53988097
chr17 33302712 33302722 GBX2 JASPAR yes 33307513 4791 53988098
chr17 33302712 33302722 GSX1 JASPAR yes 33307513 4791 53988099
chr17 33302712 33302722 GSX2 JASPAR yes 33307513 4791 53988100
chr17 33302712 33302722 HESX1 JASPAR yes 33307513 4791 53988101
chr17 33302712 33302722 LBX2 JASPAR yes 33307513 4791 53988102
chr17 33302712 33302722 LHX2 JASPAR yes 33307513 4791 53988103
chr17 33302712 33302722 MIXL1 JASPAR yes 33307513 4791 53988104
chr17 33302712 33302722 MNX1 JASPAR yes 33307513 4791 53988105
chr17 33302712 33302722 RAX JASPAR yes 33307513 4791 53988106
chr17 33302713 33302721 BARX1 JASPAR yes 33307513 4792 53988107
chr17 33302713 33302721 BSX JASPAR yes 33307513 4792 53988108
chr17 33302713 33302721 DLX6 JASPAR yes 33307513 4792 53988109
chr17 33302713 33302721 ISX JASPAR yes 33307513 4792 53988110
chr17 33302713 33302721 LBX1 JASPAR yes 33307513 4792 53988111
chr17 33302713 33302721 LHX9 JASPAR yes 33307513 4792 53988112
chr17 33302713 33302721 MSX1 JASPAR yes 33307513 4792 53988113
chr17 33302713 33302721 MSX2 JASPAR yes 33307513 4792 53988114
chr17 33302713 33302721 NKX6-2 JASPAR yes 33307513 4792 53988115
chr17 33302713 33302721 PRRX1 JASPAR yes 33307513 4792 53988116
chr17 33302713 33302721 RAX2 JASPAR yes 33307513 4792 53988117
chr17 33302713 33302721 SHOX JASPAR yes 33307513 4792 53988118
chr17 33302713 33302721 UNCX JASPAR yes 33307513 4792 53988119
chr17 33302715 33302725 NFIA JASPAR yes 33307513 4788 53988120
chr17 33302716 33302725 NFIX JASPAR yes 33307513 4788 53988121
chr17 33302717 33302723 NFIC JASPAR yes 33307513 4790 53988122
chr17 33302736 33302751 MEF2A JASPAR yes 33307513 4762 53988123
chr17 33302737 33302752 MEF2C JASPAR yes 33307513 4761 53988124
chr17 33302738 33302750 MEF2A JASPAR yes 33307513 4763 53988125
chr17 33302738 33302750 MEF2B JASPAR yes 33307513 4763 53988126
chr17 33302738 33302750 MEF2D JASPAR yes 33307513 4763 53988127
chr17 33302739 33302749 MEF2A JASPAR yes 33307513 4764 53988128
chr17 33302740 33302744 YY1 TRANSFAC yes 33307513 4769 53988129
chr17 33302746 33302751 GATA2 JASPAR yes 33307513 4762 53988130
chr17 33302752 33302756 YY1 TRANSFAC yes 33307513 4757 53988131
chr17 33302752 33302763 CEBPB JASPAR yes 33307513 4750 53988132
chr17 33302753 33302764 CEBPA JASPAR yes 33307513 4749 53988133
chr17 33302759 33302779 RREB1 JASPAR yes 33307513 4734 53988134
chr17 33302767 33302781 IRF7 JASPAR yes 33307513 4732 53988135
chr17 33302778 33302785 NKX3-1 JASPAR yes 33307513 4728 53988136
chr17 33302794 33302810 POU4F2 JASPAR yes 33307513 4703 53988137
chr17 33302794 33302810 POU4F3 JASPAR yes 33307513 4703 53988138
chr17 33302795 33302812 NR3C1 JASPAR yes 33307513 4701 53988139
chr17 33302795 33302812 NR3C2 JASPAR yes 33307513 4701 53988140
chr17 33302837 33302848 CDX2 JASPAR yes 33307513 4665 53988141
chr17 33302839 33302848 CDX1 JASPAR yes 33307513 4665 53988142
chr17 33302839 33302849 HOXA13 JASPAR yes 33307513 4664 53988143
chr17 33302839 33302849 HOXB13 JASPAR yes 33307513 4664 53988144
chr17 33302839 33302849 HOXD13 JASPAR yes 33307513 4664 53988145
chr17 33302847 33302861 TCF7L2 JASPAR yes 33307513 4652 53988146
chr17 33302847 33302862 LEF1 JASPAR yes 33307513 4651 53988147
chr17 33302858 33302871 DUXA JASPAR yes 33307513 4642 53988148
chr17 33302859 33302870 DUX4 JASPAR yes 33307513 4643 53988149
chr17 33302861 33302875 ONECUT1 JASPAR yes 33307513 4638 53988150
chr17 33302861 33302875 ONECUT2 JASPAR yes 33307513 4638 53988151
chr17 33302861 33302875 ONECUT3 JASPAR yes 33307513 4638 53988152
chr17 33302861 33302876 HNF1A JASPAR yes 33307513 4637 53988153
chr17 33302862 33302872 LHX6 JASPAR yes 33307513 4641 53988154
chr17 33302864 33302874 CUX1 JASPAR yes 33307513 4639 53988155
chr17 33302864 33302874 CUX2 JASPAR yes 33307513 4639 53988156
chr17 33302864 33302874 PAX3 JASPAR yes 33307513 4639 53988157
chr17 33302864 33302874 PAX7 JASPAR yes 33307513 4639 53988158
chr17 33302868 33302880 FOXI1 JASPAR yes 33307513 4633 53988159
chr17 33302880 33302896 RFX2 JASPAR yes 33307513 4617 53988160
chr17 33302880 33302896 RFX3 JASPAR yes 33307513 4617 53988161
chr17 33302880 33302896 RFX4 JASPAR yes 33307513 4617 53988162
chr17 33302887 33302898 DMRT3 JASPAR yes 33307513 4615 53988163
chr17 33302889 33302894 GATA2 JASPAR yes 33307513 4619 53988164
chr17 33302891 33302903 FOXI1 JASPAR yes 33307513 4610 53988165
chr17 33302895 33302909 ONECUT3 JASPAR yes 33307513 4604 53988166
chr17 33302896 33302912 SOX8 JASPAR yes 33307513 4601 53988167
chr17 33302928 33302932 H1TF2 TRANSFAC yes 33307513 4581 53988168
chr17 33302928 33302932 NFE TRANSFAC yes 33307513 4581 53988169
chr17 33302928 33302932 SRF TRANSFAC yes 33307513 4581 53988170
chr17 33302928 33302941 DUXA JASPAR yes 33307513 4572 53988171
chr17 33302929 33302940 DUX4 JASPAR yes 33307513 4573 53988172
chr17 33302957 33302961 H1TF2 TRANSFAC yes 33307513 4552 53988173
chr17 33302957 33302961 NFE TRANSFAC yes 33307513 4552 53988174
chr17 33302957 33302961 SRF TRANSFAC yes 33307513 4552 53988175
chr17 33302957 33302967 HOXA13 JASPAR yes 33307513 4546 53988176
chr17 33302966 33302977 STAT1 JASPAR yes 33307513 4536 53988177
chr17 33302973 33302976 MYB TRANSFAC yes 33307513 4537 53988178
chr17 33302984 33302990 ZNF354C JASPAR yes 33307513 4523 53988179
chr17 33302986 33302991 GATA2 JASPAR yes 33307513 4522 53988180
chr17 33302997 33303012 IRF9 JASPAR yes 33307513 4501 53988181
chr17 33303006 33303020 NR2F1 JASPAR yes 33307513 4493 53988182
chr17 33303025 33303037 IRF1 JASPAR yes 33307513 4476 53988183
chr17 33303060 33303066 PEA3 TRANSFAC yes 33307513 4447 53988184
chr17 33303060 33303081 ZNF263 JASPAR yes 33307513 4432 53988185
chr17 33303063 33303084 ZNF263 JASPAR yes 33307513 4429 53988186
chr17 33303071 33303077 SOX10 JASPAR yes 33307513 4436 53988187
chr17 33303089 33303093 YY1 TRANSFAC yes 33307513 4420 53988188
chr17 33303101 33303108 JUN TRANSFAC yes 33307513 4405 53988189
chr17 33303101 33303108 SP1 TRANSFAC yes 33307513 4405 53988190
chr17 33303111 33303115 TEAD2 TRANSFAC yes 33307513 4398 53988191
chr17 33303111 33303116 TBP TRANSFAC yes 33307513 4397 53988192
chr17 33303145 33303149 ESR1 TRANSFAC yes 33307513 4364 53988193
chr17 33303156 33303168 FOXI1 JASPAR yes 33307513 4345 53988194
chr17 33303160 33303175 NFYB JASPAR yes 33307513 4338 53988195
chr17 33303167 33303171 H1TF2 TRANSFAC yes 33307513 4342 53988196
chr17 33303167 33303171 NFE TRANSFAC yes 33307513 4342 53988197
chr17 33303167 33303171 SRF TRANSFAC yes 33307513 4342 53988198
chr17 33303176 33303187 FOXH1 JASPAR yes 33307513 4326 53988199
chr17 33303185 33303200 RUNX2 JASPAR yes 33307513 4313 53988200
chr17 33303205 33303215 MEF2A JASPAR yes 33307513 4298 53988201
chr17 33303251 33303262 FOXA1 JASPAR yes 33307513 4251 53988202
chr17 33303253 33303264 FOXP2 JASPAR yes 33307513 4249 53988203
chr17 33303255 33303273 NR3C1 JASPAR yes 33307513 4240 53988204
chr17 33303270 33303276 HiNF-A TRANSFAC yes 33307513 4237 53988205
chr17 33303295 33303307 BHLHE23 JASPAR yes 33307513 4206 53988206
chr17 33303296 33303306 NEUROD2 JASPAR yes 33307513 4207 53988207
chr17 33303296 33303306 OLIG2 JASPAR yes 33307513 4207 53988208
chr17 33303308 33303319 DUX4 JASPAR yes 33307513 4194 53988209
chr17 33303310 33303315 MYB TRANSFAC yes 33307513 4198 53988210
chr17 33303315 33303328 HSF4 JASPAR yes 33307513 4185 53988211
chr17 33303319 33303325 GATA3 JASPAR yes 33307513 4188 53988212
chr17 33303371 33303384 POU2F2 JASPAR yes 33307513 4129 53988213
chr17 33303381 33303385 NFE TRANSFAC yes 33307513 4128 53988214
chr17 33303382 33303387 GATA2 JASPAR yes 33307513 4126 53988215
chr17 33303384 33303390 MZF1 JASPAR yes 33307513 4123 53988216
chr17 33303388 33303392 YY1 TRANSFAC yes 33307513 4121 53988217
SNPs associated with LIG3[ENSG00000005156.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 33354526 rs112050411 C T 22443 Esophagus 4.13454e-07 4842639
chr17 33415394 rs7211949 T A,C 83311 Esophagus 0.00230646 4843102
chr17 33307586 rs12945428 G A 0 Heart 3.66221e-18 4842560
chr17 33382734 rs2339123 C T 50651 Pancreas 6.00151e-10 4842816
chr17 33412739 rs797990 G A 80656 Breast 1.76248e-13 4843077
chr17 33399745 rs1088450 T C 67662 Stomach 5.70706e-08 4842951
Details of LIG3[ENSG00000005156.7]
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Genomic Location chr17:33307513-33332083[+]
TSS 33307513
Gene Name LIG3
Ensembl ID ENSG00000005156.7
ENTREZID 3980
Uniprot
P49916
Protein Name
ATP-dependent
DNA
DNA ligase 3
Leucine-rich repeats and immunoglobulin-like domains protein 3
Ligase III
Expression levels of LIG3[ENSG00000005156.7]
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