EnhancerDB
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Enhancers that regulate RPAP3[ENSG00000005175.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 47994140 48004675 enh2321 48099844 95169
Astrocyte Bone (Osteoblast) Blood (Karpas-422)
chr12 48028827 48033253 enh80192 48099844 66591
Prostate (PC-3) Lung (PC-9) Colon (HCT116)
chr12 48042303 48052075 enh2322 48099844 47769
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Brain (SK-N-MC) Ovary Esophagus Lung (A549) Muscle (A673) Peripheral Blood (MM.1S) Blood (Karpas-422) Stomach
chr12 48053201 48053247 vista13290 48099844 46597
VISTA
chr12 48076459 48076736 vista13291 48099844 23108
VISTA
chr12 48100473 48100834 vista13292 48099844 629
VISTA
chr12 48114065 48118215 enh14685 48099844 14221
Placenta
chr12 48128094 48132244 enh64598 48099844 28250
Heart
chr12 48150543 48163266 enh14686 48099844 50699
Prostate (RWPE1) Ovary Esophagus Lung (A549) Stomach Muscle (A673) Placenta Thyroid Neural Stem Cells (H9) Thymus Heart
chr12 48164420 48171781 enh2323 48099844 64576
Cervix (HeLa-S3) Uterus Bone (Osteoblast) Blood (Karpas-422)
chr12 48195468 48195540 vista13293 48099844 95624
VISTA
chr12 48196110 48206535 enh14687 48099844 96266
Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Placenta Peripheral Blood (MM.1S) Uterus Thymus Heart
Transcript facotrs that regulate RPAP3[ENSG00000005175.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 48100062 48100498 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 48099844 218 108029016
chr12 48100265 48100535 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 48099844 421 108029017
chr12 48100280 48100520 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 48099844 436 108029018
chr12 48100354 48100724 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 48099844 510 108029019
chr12 48100367 48100877 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 48099844 523 108029020
chr12 48100421 48100600 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 48099844 577 108029021
chr12 48100434 48100638 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 48099844 590 108029022
chr12 48100450 48100846 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 48099844 606 108029023
chr12 48100478 48100496 IRF2 JASPAR yes 48099844 634 82398668
chr12 48100480 48100501 IRF1 JASPAR yes 48099844 636 82398669
chr12 48100482 48100497 IRF9 JASPAR yes 48099844 638 82398670
chr12 48100483 48100497 IRF7 JASPAR yes 48099844 639 82398671
chr12 48100483 48100497 IRF8 JASPAR yes 48099844 639 82398672
chr12 48100484 48100499 STAT2 JASPAR yes 48099844 640 82398673
chr12 48100484 48100502 IRF2 JASPAR yes 48099844 640 82398674
chr12 48100485 48100497 IRF1 JASPAR yes 48099844 641 82398675
chr12 48100485 48100500 FOXP1 JASPAR yes 48099844 641 82398676
chr12 48100486 48100507 IRF1 JASPAR yes 48099844 642 82398677
chr12 48100488 48100502 IRF7 JASPAR yes 48099844 644 82398678
chr12 48100491 48100506 MEF2C JASPAR yes 48099844 647 82398679
chr12 48100501 48100515 SPI1 JASPAR yes 48099844 657 82398680
chr12 48100517 48100532 FOXP1 JASPAR yes 48099844 673 82398681
chr12 48100524 48100530 HiNF-A TRANSFAC yes 48099844 680 82398682
chr12 48100525 48100537 FOXC2 JASPAR yes 48099844 681 82398683
chr12 48100526 48100538 FOXI1 JASPAR yes 48099844 682 82398684
chr12 48100531 48100545 STAT1 JASPAR yes 48099844 687 82398685
chr12 48100531 48100546 STAT2 JASPAR yes 48099844 687 82398686
chr12 48100539 48100554 PRDM1 JASPAR yes 48099844 695 82398687
chr12 48100541 48100551 NFATC3 JASPAR yes 48099844 697 82398688
chr12 48100547 48100551 YY1 TRANSFAC yes 48099844 703 82398689
chr12 48100564 48100567 MYB TRANSFAC yes 48099844 720 82398690
chr12 48100564 48100575 RUNX1 JASPAR yes 48099844 720 82398691
chr12 48100574 48100579 GATA2 JASPAR yes 48099844 730 82398692
chr12 48100590 48100602 ZBTB7B JASPAR yes 48099844 746 82398693
chr12 48100590 48100602 ZBTB7C JASPAR yes 48099844 746 82398694
chr12 48100591 48100752 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 48099844 747 108029024
chr12 48100611 48100626 HNF4A JASPAR yes 48099844 767 82398695
chr12 48100634 48100647 POU2F2 JASPAR yes 48099844 790 82398696
chr12 48100635 48100646 FOXB1 JASPAR yes 48099844 791 82398697
chr12 48100637 48100646 POU3F4 JASPAR yes 48099844 793 82398698
chr12 48100638 48100646 FOXL1 JASPAR yes 48099844 794 82398699
chr12 48100646 48100656 CLOCK JASPAR yes 48099844 802 82398700
chr12 48100646 48100656 HEY1 JASPAR yes 48099844 802 82398701
chr12 48100648 48100653 MYC TRANSFAC yes 48099844 804 82398702
chr12 48100648 48100653 USF1 TRANSFAC yes 48099844 804 82398703
chr12 48100648 48100653 USF2 TRANSFAC yes 48099844 804 82398704
chr12 48100650 48100670 RREB1 JASPAR yes 48099844 806 82398705
chr12 48100652 48100672 RREB1 JASPAR yes 48099844 808 82398706
chr12 48100654 48100674 RREB1 JASPAR yes 48099844 810 82398707
chr12 48100663 48100675 FOXI1 JASPAR yes 48099844 819 82398708
chr12 48100672 48100692 RREB1 JASPAR yes 48099844 828 82398709
chr12 48100674 48100694 RREB1 JASPAR yes 48099844 830 82398710
chr12 48100676 48100696 RREB1 JASPAR yes 48099844 832 82398711
chr12 48100678 48100698 RREB1 JASPAR yes 48099844 834 82398712
chr12 48100680 48100700 RREB1 JASPAR yes 48099844 836 82398713
chr12 48100682 48100702 RREB1 JASPAR yes 48099844 838 82398714
chr12 48100684 48100704 RREB1 JASPAR yes 48099844 840 82398715
chr12 48100686 48100706 RREB1 JASPAR yes 48099844 842 82398716
chr12 48100688 48100708 RREB1 JASPAR yes 48099844 844 82398717
chr12 48100690 48100710 RREB1 JASPAR yes 48099844 846 82398718
chr12 48100692 48100712 RREB1 JASPAR yes 48099844 848 82398719
chr12 48100694 48100714 RREB1 JASPAR yes 48099844 850 82398720
chr12 48100696 48100716 RREB1 JASPAR yes 48099844 852 82398721
chr12 48100698 48100718 RREB1 JASPAR yes 48099844 854 82398722
chr12 48100724 48100729 H4TF1 TRANSFAC yes 48099844 880 82398723
chr12 48100736 48100740 NFE TRANSFAC yes 48099844 892 82398724
chr12 48100737 48100742 GATA2 JASPAR yes 48099844 893 82398725
chr12 48100747 48100760 JUN JASPAR yes 48099844 903 82398726
chr12 48100748 48100761 ATF4 JASPAR yes 48099844 904 82398727
chr12 48100751 48100762 NFIL3 JASPAR yes 48099844 907 82398728
chr12 48100754 48100764 HMBOX1 JASPAR yes 48099844 910 82398729
chr12 48100756 48100759 MYB TRANSFAC yes 48099844 912 82398730
chr12 48100768 48100783 NFYB JASPAR yes 48099844 924 82398731
chr12 48100770 48100786 NFYA JASPAR yes 48099844 926 82398732
chr12 48100771 48100782 DUX4 JASPAR yes 48099844 927 82398733
chr12 48100771 48100789 NFYA JASPAR yes 48099844 927 82398734
chr12 48100775 48100779 H1TF2 TRANSFAC yes 48099844 931 82398735
chr12 48100775 48100779 NFE TRANSFAC yes 48099844 931 82398736
chr12 48100775 48100779 SRF TRANSFAC yes 48099844 931 82398737
chr12 48100799 48100804 GATA2 JASPAR yes 48099844 955 82398738
chr12 48100812 48100816 YY1 TRANSFAC yes 48099844 968 82398739
SNPs associated with RPAP3[ENSG00000005175.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 48100243 rs112314187 A AT 399 Esophagus 0.0452004 2613294
chr12 47624471 rs832711 T C 432599 Esophagus 0.276296 2610215
chr12 48144520 rs61917619 G C 44676 Breast 0.319681 2613548
chr12 48204804 rs7316233 A G 104960 Uterus 0.377714 2613996
chr12 47639964 rs855142 C T 417106 Thyroid 0.13638 2610350
Details of RPAP3[ENSG00000005175.5]
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Genomic Location chr12:48057070-48099844[-]
TSS 48099844
Gene Name RPAP3
Ensembl ID ENSG00000005175.5
ENTREZID 79657
Uniprot
Q9H6T3
Protein Name
RNA polymerase II-associated protein 3
Expression levels of RPAP3[ENSG00000005175.5]
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