EnhancerDB
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Enhancers that regulate PRKCH[ENSG00000027075.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr14 61552145 61559875 enh3249 61654277 94402
Prostate (PC-3) Blood (Karpas-422)
chr14 61563565 61582555 enh3250 61654277 71722
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr14 61568663 61568794 vista17982 61654277 85483
VISTA
chr14 61568840 61569300 vista17983 61654277 84977
VISTA
chr14 61570265 61570959 vista17984 61654277 83318
VISTA
chr14 61571196 61571403 vista17985 61654277 82874
VISTA
chr14 61583805 61600555 enh3251 61654277 53722
Cervix (HeLa-S3) Brain (SK-N-MC) Esophagus Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr14 61599725 61599951 vista17986 61654277 54326
VISTA
chr14 61603905 61609835 enh80847 61654277 44442
Prostate (PC-3)
chr14 61609837 61617203 enh15651 61654277 37074
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Breast Muscle (Myotube) Uterus Stomach
chr14 61612107 61612325 vista17987 61654277 41952
VISTA
chr14 61617785 61623775 enh75498 61654277 30502
Muscle (A673) Brain (SK-N-SH) Epithelial (MCF-7)
chr14 61632925 61637075 enh30952 61654277 17202
Astrocyte
chr14 61639245 61648735 enh3252 61654277 5542
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung (A549) Blood (GM12878) Muscle (A673) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Blood (T-cell) Stomach
chr14 61645426 61645731 vista17988 61654277 8546
VISTA
chr14 61652622 61652735 vista17989 61654277 1542
VISTA
chr14 61654939 61655124 vista17990 61654277 662
VISTA
chr14 61660825 61666395 enh75499 61654277 6548
Muscle (A673)
chr14 61667742 61672160 enh94920 61654277 13465
Muscle (Myoblast)
chr14 61678185 61682355 enh75500 61654277 23908
Muscle (A673) Brain (SK-N-MC)
chr14 61682385 61698355 enh68750 61654277 28108
Prostate (PC-3) Brain (SK-N-MC) Stomach Muscle (A673) Thyroid Muscle (Myoblast) Neural Stem Cells (H9) Epithelial (MCF-7)
chr14 61699405 61709115 enh3253 61654277 45128
Neural Stem Cells (H9) Blood (Karpas-422)
chr14 61709680 61733175 enh3254 61654277 55403
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Astrocyte Bone (Osteoblast) Muscle (A673) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube)
chr14 61734327 61738641 enh102499 61654277 80050
Bone (Osteoblast)
Transcript facotrs that regulate PRKCH[ENSG00000027075.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr14 61652639 61652648 ZEB1 JASPAR yes 61654277 1629 107559064
chr14 61652651 61652655 YY1 TRANSFAC yes 61654277 1622 107559065
chr14 61652657 61652670 SCRT2 JASPAR yes 61654277 1607 107559066
chr14 61652657 61652672 SCRT1 JASPAR yes 61654277 1605 107559067
chr14 61652670 61652674 YY1 TRANSFAC yes 61654277 1603 107559068
chr14 61652716 61652720 TEAD2 TRANSFAC yes 61654277 1557 107559069
chr14 61652716 61652721 TBP TRANSFAC yes 61654277 1556 107559070
chr14 61652719 61653251 ZBTB33 GTRD no Lung (A549) 61654277 1026 108105885
chr14 61654927 61655303 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 61654277 650 108105886
chr14 61654967 61654988 ZNF263 JASPAR yes 61654277 690 107559071
chr14 61654968 61654973 ETS2 TRANSFAC yes 61654277 691 107559072
chr14 61654971 61654992 ZNF263 JASPAR yes 61654277 694 107559073
chr14 61654974 61654989 NR2C2 JASPAR yes 61654277 697 107559074
chr14 61654975 61654989 PLAG1 JASPAR yes 61654277 698 107559075
chr14 61654975 61654996 ZNF263 JASPAR yes 61654277 698 107559076
chr14 61654976 61654997 ZNF263 JASPAR yes 61654277 699 107559077
chr14 61654977 61654981 LFA1 TRANSFAC yes 61654277 700 107559078
chr14 61654983 61654993 SP1 JASPAR yes 61654277 706 107559079
chr14 61654984 61654993 SP1 TRANSFAC yes 61654277 707 107559080
chr14 61654985 61654991 MAZ TRANSFAC yes 61654277 708 107559081
chr14 61654993 61654998 SP1 TRANSFAC yes 61654277 716 107559082
chr14 61655001 61655016 AR JASPAR yes 61654277 724 107559083
chr14 61655012 61655027 TP53 JASPAR yes 61654277 735 107559084
chr14 61655013 61655021 MEIS2 JASPAR yes 61654277 736 107559085
chr14 61655013 61655021 MEIS3 JASPAR yes 61654277 736 107559086
chr14 61655014 61655018 NFE TRANSFAC yes 61654277 737 107559087
chr14 61655014 61655021 MEIS1 JASPAR yes 61654277 737 107559088
chr14 61655059 61655289 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 61654277 782 108105887
chr14 61655069 61655075 NFE2 TRANSFAC yes 61654277 792 107559089
chr14 61655073 61655079 SP1 TRANSFAC yes 61654277 796 107559090
chr14 61655073 61655083 SP1 JASPAR yes 61654277 796 107559091
chr14 61655075 61655080 SP1 TRANSFAC yes 61654277 798 107559092
chr14 61655095 61655103 EHF JASPAR yes 61654277 818 107559093
chr14 61655106 61655115 TFAP2A JASPAR yes 61654277 829 107559094
SNPs associated with PRKCH[ENSG00000027075.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr14 62213848 rs2057482 T C 196154 Esophagus 0.0247873 3593629
chr14 61681740 rs9323368 C T 0 Esophagus 0.270045 3588001
chr14 62013894 rs1111107 A G 0 Heart 0.0117561 3591679
chr14 62411087 rs2784498 A G 393393 Breast 0.382758 3594742
chr14 61998899 rs3837623 T TA 0 Spleen 0.38328 3591527
chr14 62102679 rs78733452 C T 84985 Ovary 0.168877 3592678
chr14 61935615 rs117289426 T C 0 Uterus 0.249975 3590574
chr14 61833376 rs4899039 A T 0 Thyroid 0.00709487 3589413
chr14 61952124 rs2251380 G A,C 0 Liver 0.271902 3590857
chr14 60689160 rs10148587 C T 965117 Adrenal 0.187173 3583035
Details of PRKCH[ENSG00000027075.9]
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Genomic Location chr14:61654277-62017694[+]
TSS 61654277
Gene Name PRKCH
Ensembl ID ENSG00000027075.9
ENTREZID 5583
Uniprot
P24723
Protein Name
PRKCH protein
Protein kinase C eta type
Expression levels of PRKCH[ENSG00000027075.9]
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