EnhancerDB
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Enhancers that regulate TNFRSF9[ENSG00000049249.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 7927745 7931915 enh78949 8000926 69011
Prostate (PC-3) Cervix (HeLa-S3)
chr1 7944505 7965053 enh26518 8000926 35873
Prostate (PC-3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Colon (HCT116) Muscle (Myoblast) Pancreas Blood (T-cell)
chr1 7947650 7947935 vista211 8000926 52991
VISTA
chr1 7950902 7950918 vista212 8000926 50008
VISTA
chr1 7970025 7974495 enh95829 8000926 26431
Epithelial (MCF-7)
chr1 7987825 7992855 enh107365 8000926 8071
Blood (T-cell)
chr1 8001518 8001767 vista213 8000926 592
VISTA
chr1 8033385 8037595 enh61786 8000926 32459
Ovary Esophagus Liver Spleen Uterus Stomach
chr1 8039565 8044729 enh61787 8000926 38639
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Prostate (RWPE1) Ovary Esophagus Colon (HCT116) Breast Uterus Adrenal Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Neural Stem Cells (H9) Stomach
chr1 8046025 8056395 enh11456 8000926 45099
Skin (Keratinocyte) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Placenta Peripheral Blood (MM.1S) Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Neural Stem Cells (H9)
chr1 8054249 8054565 vista214 8000926 53323
VISTA
chr1 8061589 8069479 enh11457 8000926 60663
Esophagus Placenta Neural Stem Cells (H9)
chr1 8070132 8070398 vista215 8000926 69206
VISTA
chr1 8073125 8084015 enh11458 8000926 72199
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Placenta Thyroid Uterus Pancreas Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 8076289 8076986 vista216 8000926 75363
VISTA
chr1 8089365 8111955 enh11459 8000926 88439
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript facotrs that regulate TNFRSF9[ENSG00000049249.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 8001214 8001966 TCF7L2 GTRD no Colon (HCT116) 8000926 288 107801941
chr1 8001519 8001540 ZNF263 JASPAR yes 8000926 593 118223285
chr1 8001526 8001547 ZNF263 JASPAR yes 8000926 600 118223286
chr1 8001527 8001548 ZNF263 JASPAR yes 8000926 601 118223287
chr1 8001530 8001536 PEA3 TRANSFAC yes 8000926 604 118223288
chr1 8001530 8001551 ZNF263 JASPAR yes 8000926 604 118223289
chr1 8001531 8001539 EHF JASPAR yes 8000926 605 118223290
chr1 8001531 8001552 ZNF263 JASPAR yes 8000926 605 118223291
chr1 8001534 8001555 ZNF263 JASPAR yes 8000926 608 118223292
chr1 8001536 8001547 E2F6 JASPAR yes 8000926 610 118223293
chr1 8001537 8001558 ZNF263 JASPAR yes 8000926 611 118223294
chr1 8001538 8001559 ZNF263 JASPAR yes 8000926 612 118223295
chr1 8001541 8001562 ZNF263 JASPAR yes 8000926 615 118223296
chr1 8001543 8001549 HiNF-A TRANSFAC yes 8000926 617 118223297
chr1 8001545 8001559 E2F7 JASPAR yes 8000926 619 118223298
chr1 8001548 8001559 E2F6 JASPAR yes 8000926 622 118223299
chr1 8001549 8001570 IRF1 JASPAR yes 8000926 623 118223300
chr1 8001553 8001567 STAT1 JASPAR yes 8000926 627 118223301
chr1 8001553 8001568 STAT2 JASPAR yes 8000926 627 118223302
chr1 8001556 8001566 NFATC3 JASPAR yes 8000926 630 118223303
chr1 8001558 8001566 FOXO3 JASPAR yes 8000926 632 118223304
chr1 8001561 8001575 SPIC JASPAR yes 8000926 635 118223305
chr1 8001567 8001572 ETS2 TRANSFAC yes 8000926 641 118223306
chr1 8001649 8001670 IRF1 JASPAR yes 8000926 723 118223307
chr1 8001653 8001658 H4TF1 TRANSFAC yes 8000926 727 118223308
chr1 8001667 8001682 FOXP1 JASPAR yes 8000926 741 118223309
chr1 8001668 8001683 FOXP1 JASPAR yes 8000926 742 118223310
chr1 8001668 8001689 IRF1 JASPAR yes 8000926 742 118223311
chr1 8001669 8001675 TBP TRANSFAC yes 8000926 743 118223312
chr1 8001669 8001684 FOXP1 JASPAR yes 8000926 743 118223313
chr1 8001670 8001685 FOXP1 JASPAR yes 8000926 744 118223314
chr1 8001675 8001696 IRF1 JASPAR yes 8000926 749 118223315
chr1 8001679 8001694 PRDM1 JASPAR yes 8000926 753 118223316
chr1 8001698 8001712 JUN JASPAR yes 8000926 772 118223317
chr1 8001701 8001712 FOSL2 JASPAR yes 8000926 775 118223318
chr1 8001701 8001712 JUNB JASPAR yes 8000926 775 118223319
chr1 8001702 8001713 FOS JASPAR yes 8000926 776 118223320
chr1 8001702 8001713 FOSL1 JASPAR yes 8000926 776 118223321
chr1 8001702 8001713 JUND JASPAR yes 8000926 776 118223322
chr1 8001702 8001713 NFE2 JASPAR yes 8000926 776 118223323
chr1 8001703 8001710 JUN TRANSFAC yes 8000926 777 118223324
chr1 8001703 8001712 JDP2 JASPAR yes 8000926 777 118223325
chr1 8001703 8001714 FOSL2 JASPAR yes 8000926 777 118223326
chr1 8001703 8001714 JUNB JASPAR yes 8000926 777 118223327
chr1 8001703 8001717 JUN JASPAR yes 8000926 777 118223328
chr1 8001704 8001715 BATF JASPAR yes 8000926 778 118223329
chr1 8001742 8001748 ZNF354C JASPAR yes 8000926 816 118223330
chr1 8001756 8001764 CREB1 JASPAR yes 8000926 830 118223331
chr1 8001759 8001763 ESR1 TRANSFAC yes 8000926 833 118223332
SNPs associated with TNFRSF9[ENSG00000049249.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 8906286 rs139529766 C T 905360 Heart 0.294973 59526
chr1 7912212 rs397957110 G GT 67695 Breast 0.0982404 49176
chr1 7559372 rs200579961 G GTC 420535 Spleen 0.443571 46804
chr1 7575435 rs1212724 T C 404472 Thyroid 0.118373 47068
chr1 8292761 rs299499 G A 291835 Lung 0.0454677 53578
chr1 7449479 rs76491165 C T 530428 Adrenal 0.379106 45283
Details of TNFRSF9[ENSG00000049249.4]
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Genomic Location chr1:7979907-8000926[-]
TSS 8000926
Gene Name TNFRSF9
Ensembl ID ENSG00000049249.4
ENTREZID 3604
Uniprot
Q07011
Protein Name
Tumor necrosis factor receptor superfamily member 9
Expression levels of TNFRSF9[ENSG00000049249.4]
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