EnhancerDB
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Enhancers that regulate SEMA3C[ENSG00000075223.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr7 80449165 80454635 enh56353 80551675 97040
Large Intestine
chr7 80456985 80474901 enh40312 80551675 76774
Prostate (PC-3) Brain (SK-N-SH) Large Intestine Esophagus Astrocyte Stomach Peripheral Blood (MM.1S) Uterus Neural Stem Cells (H9) Epithelial (MCF-7)
chr7 80479325 80492095 enh24294 80551675 59580
Prostate (PC-3) Large Intestine Astrocyte Stomach Placenta Lung (PC-9) Muscle (Myoblast) Uterus Epithelial (MCF-7)
chr7 80488123 80488172 vista56403 80551675 63503
VISTA
chr7 80495985 80508597 enh40313 80551675 43078
Prostate (PC-3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Large Intestine Astrocyte Lung (PC-9) Uterus Epithelial (MCF-7)
chr7 80508765 80518352 enh24295 80551675 33323
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Esophagus Astrocyte Stomach Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr7 80512986 80513276 vista56404 80551675 38399
VISTA
chr7 80522525 80534579 enh40314 80551675 17096
Prostate (PC-3) Prostate (RWPE1) Esophagus Astrocyte Colon (HCT116) Muscle (Myoblast) Pancreas (Panc1) Uterus
chr7 80550378 80550824 vista56405 80551675 851
VISTA
chr7 80557025 80565855 enh40315 80551675 5350
Astrocyte Prostate (PC-3) Lung (PC-9)
chr7 80559039 80559447 vista56406 80551675 7364
VISTA
chr7 80567739 80574895 enh24296 80551675 16064
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Placenta Colon (HCT116) Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Epithelial (MCF-7)
chr7 80571600 80571811 vista56407 80551675 19925
VISTA
chr7 80582405 80586555 enh114576 80551675 30730
Brain (SK-N-MC)
chr7 80629745 80635755 enh40316 80551675 78070
Astrocyte Prostate (PC-3) Bone (Osteoblast)
chr7 80636240 80645946 enh40317 80551675 84565
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Uterus
Transcript facotrs that regulate SEMA3C[ENSG00000075223.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr7 80550398 80550409 FOXB1 JASPAR yes 80551675 1266 26088346
chr7 80550399 80550403 YY1 TRANSFAC yes 80551675 1272 26088347
chr7 80550404 80550410 SOX10 JASPAR yes 80551675 1265 26088348
chr7 80550414 80550756 TCF7L2 UCSC Txn Factor no Conserved 80551675 919 108544673
chr7 80550431 80550443 FOXI1 JASPAR yes 80551675 1232 26088349
chr7 80550440 80550444 H1TF2 TRANSFAC yes 80551675 1231 26088350
chr7 80550440 80550444 NFE TRANSFAC yes 80551675 1231 26088351
chr7 80550440 80550444 SRF TRANSFAC yes 80551675 1231 26088352
chr7 80550459 80550471 HLF JASPAR yes 80551675 1204 26088353
chr7 80550460 80550472 HNF1B JASPAR yes 80551675 1203 26088354
chr7 80550499 80550512 DUXA JASPAR yes 80551675 1163 26088355
chr7 80550500 80550511 DUX4 JASPAR yes 80551675 1164 26088356
chr7 80550521 80550529 HOXA5 JASPAR yes 80551675 1146 26088357
chr7 80550572 80550583 EBF1 JASPAR yes 80551675 1092 26088358
chr7 80550587 80550602 FOXA1 JASPAR yes 80551675 1073 26088359
chr7 80550591 80550595 YY1 TRANSFAC yes 80551675 1080 26088360
chr7 80550591 80550602 FOXA1 JASPAR yes 80551675 1073 26088361
chr7 80550616 80550621 MYC TRANSFAC yes 80551675 1054 26088362
chr7 80550623 80550631 TBX5 JASPAR yes 80551675 1044 26088363
chr7 80550630 80550644 JUN JASPAR yes 80551675 1031 26088364
chr7 80550632 80550643 BATF JASPAR yes 80551675 1032 26088365
chr7 80550632 80550643 DUX4 JASPAR yes 80551675 1032 26088366
chr7 80550633 80550647 PAX6 JASPAR yes 80551675 1028 26088367
chr7 80550634 80550645 FOS JASPAR yes 80551675 1030 26088368
chr7 80550634 80550645 FOSL1 JASPAR yes 80551675 1030 26088369
chr7 80550634 80550645 JUND JASPAR yes 80551675 1030 26088370
chr7 80550634 80550645 NFE2 JASPAR yes 80551675 1030 26088371
chr7 80550635 80550643 JUND TRANSFAC yes 80551675 1032 26088372
chr7 80550635 80550644 JDP2 JASPAR yes 80551675 1031 26088373
chr7 80550635 80550646 JUNB JASPAR yes 80551675 1029 26088374
chr7 80550636 80550642 JUN TRANSFAC yes 80551675 1033 26088375
chr7 80550637 80550648 CDX2 JASPAR yes 80551675 1027 26088376
chr7 80550638 80550649 HOXA10 JASPAR yes 80551675 1026 26088377
chr7 80550638 80550649 HOXC11 JASPAR yes 80551675 1026 26088378
chr7 80550638 80550649 HOXC12 JASPAR yes 80551675 1026 26088379
chr7 80550638 80550649 HOXD12 JASPAR yes 80551675 1026 26088380
chr7 80550639 80550648 CDX1 JASPAR yes 80551675 1027 26088381
chr7 80550639 80550649 HOXA13 JASPAR yes 80551675 1026 26088382
chr7 80550639 80550649 HOXC10 JASPAR yes 80551675 1026 26088383
chr7 80550639 80550649 HOXD11 JASPAR yes 80551675 1026 26088384
chr7 80550668 80550674 GATA3 JASPAR yes 80551675 1001 26088385
chr7 80550683 80550701 ESR2 JASPAR yes 80551675 974 26088386
chr7 80550684 80550699 AR JASPAR yes 80551675 976 26088387
chr7 80550700 80550717 BCL6B JASPAR yes 80551675 958 26088388
chr7 80550726 80550736 TEAD4 JASPAR yes 80551675 939 26088389
chr7 80550735 80550738 MYB TRANSFAC yes 80551675 937 26088390
chr7 80550769 80550778 THAP1 JASPAR yes 80551675 897 26088391
chr7 80550776 80550780 YY1 TRANSFAC yes 80551675 895 26088392
chr7 80550780 80550786 MZF1 JASPAR yes 80551675 889 26088393
SNPs associated with SEMA3C[ENSG00000075223.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr7 80679210 rs1729455 A G 127535 Esophagus 0.320472 9918941
chr7 79961517 rs75278123 G T 410337 Esophagus 0.0567524 9914481
chr7 80449429 rs6943845 T A,G 0 Breast 0.203834 9917370
chr7 80067604 rs34607776 T TCAAA 304250 Thyroid 0.21277 9915002
chr7 81476966 rs73150989 G A 925291 Liver 0.260766 9923095
chr7 80562500 rs149117734 C T 10825 Lung 0.125582 9918434
chr7 80452885 rs73139728 G A 0 Stomach 0.0311415 9917417
chr7 81350466 rs141004439 A G 798791 Adrenal 0.0949282 9922815
Details of SEMA3C[ENSG00000075223.9]
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Genomic Location chr7:80371854-80551675[-]
TSS 80551675
Gene Name SEMA3C
Ensembl ID ENSG00000075223.9
ENTREZID 10512
Uniprot
Q99985
B4E2I9
Protein Name
Putative uncharacterized protein SEMA3C
Semaphorin-3C
Expression levels of SEMA3C[ENSG00000075223.9]
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