EnhancerDB
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Enhancers that regulate RAD54L[ENSG00000085999.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 46598421 46613615 enh49732 46713360 99745
Prostate (PC-3) Prostate (RWPE1) Large Intestine Thyroid Lung (PC-9) Pancreas Uterus Stomach
chr1 46615681 46628155 enh11832 46713360 85205
Bone Marrow (K562) Astrocyte Placenta Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube)
chr1 46629912 46640695 enh11833 46713360 72665
Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Lung Blood (OCI-LY7) Placenta Thyroid Pancreas Uterus Epithelial (MCF-7)
chr1 46632893 46633236 vista1482 46713360 80124
VISTA
chr1 46637172 46637331 vista1483 46713360 76029
VISTA
chr1 46637652 46637852 vista1484 46713360 75508
VISTA
chr1 46639254 46639547 vista1485 46713360 73813
VISTA
chr1 46643273 46648119 enh61835 46713360 65241
Esophagus Heart
chr1 46670325 46674475 enh64036 46713360 38885
Heart
chr1 46674865 46679975 enh11834 46713360 33385
Placenta
chr1 46689426 46689696 vista1486 46713360 23664
VISTA
chr1 46712372 46712767 vista1487 46713360 593
VISTA
chr1 46752285 46757915 enh26674 46713360 38925
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung (PC-9)
chr1 46789256 46793816 enh60124 46713360 75896
Blood (OCI-LY7)
chr1 46793807 46793895 vista1488 46713360 80447
VISTA
chr1 46795345 46800219 enh60125 46713360 81985
Blood (OCI-LY7)
chr1 46796624 46796901 vista1489 46713360 83264
VISTA
Transcript facotrs that regulate RAD54L[ENSG00000085999.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 46712282 46712832 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 46713360 528 107803089
chr1 46712383 46712403 TP53 JASPAR yes 46713360 957 118286027
chr1 46712391 46712397 HiNF-A TRANSFAC yes 46713360 963 118286028
chr1 46712393 46712409 ZNF143 JASPAR yes 46713360 951 118286029
chr1 46712409 46712424 MEF2C JASPAR yes 46713360 936 118286030
chr1 46712410 46712425 MEF2A JASPAR yes 46713360 935 118286031
chr1 46712411 46712423 MEF2A JASPAR yes 46713360 937 118286032
chr1 46712411 46712423 MEF2B JASPAR yes 46713360 937 118286033
chr1 46712411 46712423 MEF2D JASPAR yes 46713360 937 118286034
chr1 46712412 46712424 FOXI1 JASPAR yes 46713360 936 118286035
chr1 46712413 46712417 TEAD2 TRANSFAC yes 46713360 943 118286036
chr1 46712413 46712418 TBP TRANSFAC yes 46713360 942 118286037
chr1 46712413 46712419 TMF TRANSFAC yes 46713360 941 118286038
chr1 46712420 46712434 GATA2 JASPAR yes 46713360 926 118286039
chr1 46712424 46712432 GATA5 JASPAR yes 46713360 928 118286040
chr1 46712430 46712434 YY1 TRANSFAC yes 46713360 926 118286041
chr1 46712482 46712486 YY1 TRANSFAC yes 46713360 874 118286042
chr1 46712502 46712517 ZIC3 JASPAR yes 46713360 843 118286043
chr1 46712502 46712517 ZIC4 JASPAR yes 46713360 843 118286044
chr1 46712503 46712517 ZIC1 JASPAR yes 46713360 843 118286045
chr1 46712507 46712517 ZNF740 JASPAR yes 46713360 843 118286046
chr1 46712525 46712529 TEAD2 TRANSFAC yes 46713360 831 118286047
chr1 46712553 46712558 ATF1 TRANSFAC yes 46713360 802 118286048
chr1 46712566 46712571 NFY TRANSFAC yes 46713360 789 118286049
chr1 46712572 46712585 DUXA JASPAR yes 46713360 775 118286050
chr1 46712573 46712584 DUX4 JASPAR yes 46713360 776 118286051
chr1 46712592 46712598 HiNF-A TRANSFAC yes 46713360 762 118286052
chr1 46712599 46712610 FLI1 JASPAR yes 46713360 750 118286053
chr1 46712617 46712628 ESRRB JASPAR yes 46713360 732 118286054
chr1 46712628 46712635 SPIB JASPAR yes 46713360 725 118286055
chr1 46712629 46712637 EHF JASPAR yes 46713360 723 118286056
chr1 46712666 46712680 XBP1 JASPAR yes 46713360 680 118286057
chr1 46712671 46712683 CREB1 JASPAR yes 46713360 677 118286058
chr1 46712702 46712716 CREB3L1 JASPAR yes 46713360 644 118286059
chr1 46712703 46712713 MAX JASPAR yes 46713360 647 118286060
chr1 46712703 46712714 USF1 JASPAR yes 46713360 646 118286061
chr1 46712703 46712715 HES5 JASPAR yes 46713360 645 118286062
chr1 46712703 46712715 HES7 JASPAR yes 46713360 645 118286063
chr1 46712704 46712714 HEY1 JASPAR yes 46713360 646 118286064
chr1 46712704 46712714 HEY2 JASPAR yes 46713360 646 118286065
chr1 46712704 46712714 MAX JASPAR yes 46713360 646 118286066
chr1 46712704 46712714 MNT JASPAR yes 46713360 646 118286067
chr1 46712704 46712714 TFE3 JASPAR yes 46713360 646 118286068
chr1 46712704 46712714 TFEB JASPAR yes 46713360 646 118286069
chr1 46712704 46712715 USF1 JASPAR yes 46713360 645 118286070
chr1 46712704 46712715 USF2 JASPAR yes 46713360 645 118286071
chr1 46712705 46712712 USF1 JASPAR yes 46713360 648 118286072
chr1 46712705 46712715 MAX JASPAR yes 46713360 645 118286073
chr1 46712706 46712711 MYC TRANSFAC yes 46713360 649 118286074
chr1 46712706 46712711 USF1 TRANSFAC yes 46713360 649 118286075
chr1 46712706 46712711 USF2 TRANSFAC yes 46713360 649 118286076
chr1 46712706 46712713 USF1 JASPAR yes 46713360 647 118286077
chr1 46712733 46712739 MZF1 JASPAR yes 46713360 621 118286078
chr1 46712739 46712753 GLIS3 JASPAR yes 46713360 607 118286079
chr1 46712743 46712755 GLI2 JASPAR yes 46713360 605 118286080
chr1 46712743 46712755 ZBTB7B JASPAR yes 46713360 605 118286081
chr1 46712743 46712761 ESR1 JASPAR yes 46713360 599 118286082
chr1 46712744 46712756 ZBTB7A JASPAR yes 46713360 604 118286083
chr1 46712746 46712751 SP1 TRANSFAC yes 46713360 609 118286084
SNPs associated with RAD54L[ENSG00000085999.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 46949731 rs75782581 G A 205586 Heart 0.19212 288928
chr1 46912769 rs41294538 C T 168624 Spleen 0.337739 288756
chr1 46767127 rs139252995 TCTC T 22982 Liver 0.324446 288016
chr1 46951417 rs548075299 G C,T 207272 Lung 0.0272502 288946
chr1 47485753 rs1502910 G A 741608 Stomach 0.277474 290708
chr1 46084934 rs1541131 G A 628426 Adrenal 0.374519 284372
Details of RAD54L[ENSG00000085999.7]
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Genomic Location chr1:46713360-46744145[+]
TSS 46713360
Gene Name RAD54L
Ensembl ID ENSG00000085999.7
ENTREZID 8438
Uniprot
Q92698
A8K996
Protein Name
Alternative protein RAD54L
DNA repair and recombination protein RAD54-like
Transcriptional regulator ATRX
Expression levels of RAD54L[ENSG00000085999.7]
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