EnhancerDB
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Enhancers that regulate WHSC1[ENSG00000109685.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr4 1745904 1789095 enh21306 1873151 84056
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Stomach Placenta Colon (HCT116) Pancreas Thymus Heart
chr4 1796551 1796852 vista43895 1873151 76299
VISTA
chr4 1808730 1812858 enh115825 1873151 60293
Brain (SK-N-SH)
chr4 1830005 1834155 enh48790 1873151 38996
Thymus
chr4 1838846 1839065 vista43896 1873151 34086
VISTA
chr4 1843900 1844033 vista43897 1873151 29118
VISTA
chr4 1850085 1856855 enh48791 1873151 16296
Thymus Stomach
chr4 1865990 1866293 vista43898 1873151 6858
VISTA
chr4 1874737 1875082 vista43899 1873151 1586
VISTA
chr4 1875191 1875366 vista43900 1873151 2040
VISTA
chr4 1878145 1887755 enh21307 1873151 4994
Bone Marrow (K562) Liver (HepG2) Astrocyte Placenta Thyroid Spleen Heart
chr4 1907081 1912406 enh59299 1873151 33930
Skin (Keratinocyte) Prostate (RWPE1) Esophagus Colon (HCT116) Epithelial (MCF-7)
chr4 1924989 1931615 enh36297 1873151 51838
Astrocyte Colon (HCT116)
chr4 1964305 1974294 enh45609 1873151 91154
Bone Marrow (K562) Muscle (Myotube) Brain (SK-N-SH)
chr4 1966776 1967112 vista43901 1873151 93625
VISTA
chr4 1968542 1968629 vista43902 1873151 95391
VISTA
chr4 1970462 1970680 vista43903 1873151 97311
VISTA
chr4 1972677 1973039 vista43904 1873151 99526
VISTA
Transcript facotrs that regulate WHSC1[ENSG00000109685.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr4 1874468 1875046 POLR2A UCSC Txn Factor no Conserved 1873151 1317 108531842
chr4 1874741 1874747 MZF1 JASPAR yes 1873151 1590 49189605
chr4 1874773 1874779 NFIC JASPAR yes 1873151 1622 49189606
chr4 1874790 1874801 NFE2 JASPAR yes 1873151 1639 49189607
chr4 1874817 1874828 FOS JASPAR yes 1873151 1666 49189608
chr4 1874818 1874827 JDP2 JASPAR yes 1873151 1667 49189609
chr4 1874818 1874829 JUNB JASPAR yes 1873151 1667 49189610
chr4 1874818 1874832 JUN JASPAR yes 1873151 1667 49189611
chr4 1874819 1874830 BATF JASPAR yes 1873151 1668 49189612
chr4 1874823 1874834 FLI1 JASPAR yes 1873151 1672 49189613
chr4 1874823 1874844 ZNF263 JASPAR yes 1873151 1672 49189614
chr4 1874824 1874828 YY1 TRANSFAC yes 1873151 1673 49189615
chr4 1874824 1874835 ETV2 JASPAR yes 1873151 1673 49189616
chr4 1874824 1874837 ELF1 JASPAR yes 1873151 1673 49189617
chr4 1874825 1874833 FEV JASPAR yes 1873151 1674 49189618
chr4 1874827 1874832 ETS2 TRANSFAC yes 1873151 1676 49189619
chr4 1874827 1874848 ZNF263 JASPAR yes 1873151 1676 49189620
chr4 1874835 1874856 IRF1 JASPAR yes 1873151 1684 49189621
chr4 1874837 1874842 ETS2 TRANSFAC yes 1873151 1686 49189622
chr4 1874839 1874860 ZNF263 JASPAR yes 1873151 1688 49189623
chr4 1874844 1874848 YY1 TRANSFAC yes 1873151 1693 49189624
chr4 1874852 1874872 RREB1 JASPAR yes 1873151 1701 49189625
chr4 1874871 1874885 IRF7 JASPAR yes 1873151 1720 49189626
chr4 1874987 1874991 YY1 TRANSFAC yes 1873151 1836 49189627
chr4 1875002 1875017 HNF4A JASPAR yes 1873151 1851 49189628
chr4 1875014 1875018 TEAD2 TRANSFAC yes 1873151 1863 49189629
chr4 1875016 1875019 MYB TRANSFAC yes 1873151 1865 49189630
chr4 1875017 1875033 SOX8 JASPAR yes 1873151 1866 49189631
chr4 1875027 1875042 MEF2A JASPAR yes 1873151 1876 49189632
chr4 1875028 1875043 MEF2C JASPAR yes 1873151 1877 49189633
chr4 1875029 1875041 MEF2A JASPAR yes 1873151 1878 49189634
chr4 1875029 1875041 MEF2B JASPAR yes 1873151 1878 49189635
chr4 1875029 1875041 MEF2D JASPAR yes 1873151 1878 49189636
chr4 1875030 1875040 MEF2A JASPAR yes 1873151 1879 49189637
chr4 1875031 1875035 YY1 TRANSFAC yes 1873151 1880 49189638
chr4 1875039 1875054 JUND JASPAR yes 1873151 1888 49189639
chr4 1875040 1875053 JUN JASPAR yes 1873151 1889 49189640
chr4 1875046 1875056 POU6F2 JASPAR yes 1873151 1895 49189641
chr4 1875047 1875057 EMX1 JASPAR yes 1873151 1896 49189642
chr4 1875047 1875057 EMX2 JASPAR yes 1873151 1896 49189643
chr4 1875047 1875057 EVX1 JASPAR yes 1873151 1896 49189644
chr4 1875047 1875057 EVX2 JASPAR yes 1873151 1896 49189645
chr4 1875047 1875057 GBX1 JASPAR yes 1873151 1896 49189646
chr4 1875047 1875057 GBX2 JASPAR yes 1873151 1896 49189647
chr4 1875047 1875057 GSX2 JASPAR yes 1873151 1896 49189648
chr4 1875047 1875057 HESX1 JASPAR yes 1873151 1896 49189649
chr4 1875047 1875057 HOXA2 JASPAR yes 1873151 1896 49189650
chr4 1875047 1875057 HOXB2 JASPAR yes 1873151 1896 49189651
chr4 1875047 1875057 HOXB3 JASPAR yes 1873151 1896 49189652
chr4 1875047 1875057 LHX2 JASPAR yes 1873151 1896 49189653
chr4 1875047 1875057 LHX6 JASPAR yes 1873151 1896 49189654
chr4 1875047 1875057 MEOX1 JASPAR yes 1873151 1896 49189655
chr4 1875047 1875057 MEOX2 JASPAR yes 1873151 1896 49189656
chr4 1875047 1875057 MIXL1 JASPAR yes 1873151 1896 49189657
chr4 1875047 1875057 MNX1 JASPAR yes 1873151 1896 49189658
chr4 1875047 1875057 NOTO JASPAR yes 1873151 1896 49189659
chr4 1875047 1875057 RAX JASPAR yes 1873151 1896 49189660
chr4 1875047 1875058 HOXA10 JASPAR yes 1873151 1896 49189661
chr4 1875048 1875056 LMX1A JASPAR yes 1873151 1897 49189662
chr4 1875048 1875056 LMX1B JASPAR yes 1873151 1897 49189663
chr4 1875048 1875056 NKX6-1 JASPAR yes 1873151 1897 49189664
chr4 1875048 1875056 NKX6-2 JASPAR yes 1873151 1897 49189665
chr4 1875048 1875056 PDX1 JASPAR yes 1873151 1897 49189666
chr4 1875048 1875056 VAX1 JASPAR yes 1873151 1897 49189667
chr4 1875048 1875056 VAX2 JASPAR yes 1873151 1897 49189668
chr4 1875048 1875056 VSX1 JASPAR yes 1873151 1897 49189669
chr4 1875053 1875056 MYB TRANSFAC yes 1873151 1902 49189670
chr4 1875202 1875207 GATA2 JASPAR yes 1873151 2051 49189671
chr4 1875246 1875260 PAX6 JASPAR yes 1873151 2095 49189672
chr4 1875254 1875258 YY1 TRANSFAC yes 1873151 2103 49189673
chr4 1875268 1875282 JUN JASPAR yes 1873151 2117 49189674
chr4 1875270 1875281 BATF JASPAR yes 1873151 2119 49189675
chr4 1875271 1875282 FOSL2 JASPAR yes 1873151 2120 49189676
chr4 1875271 1875282 JUNB JASPAR yes 1873151 2120 49189677
chr4 1875272 1875283 FOS JASPAR yes 1873151 2121 49189678
chr4 1875272 1875283 FOSL1 JASPAR yes 1873151 2121 49189679
chr4 1875272 1875283 JUND JASPAR yes 1873151 2121 49189680
chr4 1875272 1875283 NFE2 JASPAR yes 1873151 2121 49189681
chr4 1875273 1875282 JDP2 JASPAR yes 1873151 2122 49189682
chr4 1875274 1875281 JUN TRANSFAC yes 1873151 2123 49189683
chr4 1875319 1875328 PITX3 JASPAR yes 1873151 2168 49189684
chr4 1875320 1875328 OTX2 JASPAR yes 1873151 2169 49189685
chr4 1875330 1875344 PLAG1 JASPAR yes 1873151 2179 49189686
SNPs associated with WHSC1[ENSG00000109685.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr4 2393172 rs60455040 G A 409238 Pancreas 0.392827 7351931
chr4 2767306 rs142376629 C A,T 783372 Breast 0.266591 7354188
chr4 2297586 rs13120062 G A 313652 Uterus 0.318403 7351196
chr4 981743 rs147498923 C T 891408 Thyroid 0.0834422 7343440
Details of WHSC1[ENSG00000109685.13]
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Genomic Location chr4:1873151-1983934[+]
TSS 1873151
Gene Name WHSC1
Ensembl ID ENSG00000109685.13
ENTREZID
Uniprot
Protein Name
Alternative protein WHSC1
Histone-lysine N-methyltransferase NSD2
WHSC1 protein
Expression levels of WHSC1[ENSG00000109685.13]
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