EnhancerDB
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Enhancers that regulate TBC1D30[ENSG00000111490.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 65039765 65087550 enh2405 65174589 87039
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 65076423 65076649 vista13806 65174589 97940
VISTA
chr12 65077868 65077886 vista13807 65174589 96703
VISTA
chr12 65093624 65093852 vista13808 65174589 80737
VISTA
chr12 65098667 65102861 enh43755 65174589 71728
Muscle (Myotube)
chr12 65125675 65130395 enh43756 65174589 44194
Prostate (PC-3) Epithelial (MCF-7) Muscle (A673) Muscle (Myoblast) Muscle (Myotube) Heart
chr12 65140575 65140710 vista13809 65174589 33879
VISTA
chr12 65151664 65152043 vista13810 65174589 22546
VISTA
chr12 65176068 65176517 vista13811 65174589 1479
VISTA
chr12 65181625 65209755 enh14785 65174589 7036
Prostate (PC-3) Brain (SK-N-MC) Large Intestine Lung (A549) Stomach Placenta Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 65194398 65194833 vista13812 65174589 19809
VISTA
chr12 65243965 65248115 enh109561 65174589 69376
Stomach
chr12 65248325 65257375 enh14786 65174589 73736
Placenta Peripheral Blood (MM.1S) Blood (GM12878)
chr12 65262498 65262651 vista13813 65174589 87909
VISTA
chr12 65272025 65279095 enh14787 65174589 97436
Placenta
Transcript facotrs that regulate TBC1D30[ENSG00000111490.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 65175725 65176172 ZNF274 GTRD no Bone Marrow (K562) 65174589 1136 108041950
chr12 65176071 65176086 FOXP1 JASPAR yes 65174589 1482 82423049
chr12 65176072 65176087 FOXP1 JASPAR yes 65174589 1483 82423050
chr12 65176073 65176079 TBP TRANSFAC yes 65174589 1484 82423051
chr12 65176073 65176088 FOXP1 JASPAR yes 65174589 1484 82423052
chr12 65176073 65176094 IRF1 JASPAR yes 65174589 1484 82423053
chr12 65176074 65176089 FOXP1 JASPAR yes 65174589 1485 82423054
chr12 65176076 65176280 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 65174589 1487 108041951
chr12 65176077 65176092 STAT2 JASPAR yes 65174589 1488 82423055
chr12 65176106 65176110 NFE TRANSFAC yes 65174589 1517 82423056
chr12 65176111 65176128 BCL6B JASPAR yes 65174589 1522 82423057
chr12 65176123 65176137 FOXF2 JASPAR yes 65174589 1534 82423058
chr12 65176124 65176132 GMEB2 JASPAR yes 65174589 1535 82423059
chr12 65176125 65176137 FOXC2 JASPAR yes 65174589 1536 82423060
chr12 65176128 65176135 FOXD2 JASPAR yes 65174589 1539 82423061
chr12 65176128 65176135 FOXI1 JASPAR yes 65174589 1539 82423062
chr12 65176128 65176135 FOXL1 JASPAR yes 65174589 1539 82423063
chr12 65176128 65176135 FOXO4 JASPAR yes 65174589 1539 82423064
chr12 65176128 65176135 FOXO6 JASPAR yes 65174589 1539 82423065
chr12 65176128 65176135 FOXP3 JASPAR yes 65174589 1539 82423066
chr12 65176128 65176136 FOXD1 JASPAR yes 65174589 1539 82423067
chr12 65176128 65176136 FOXO3 JASPAR yes 65174589 1539 82423068
chr12 65176131 65176141 MSC JASPAR yes 65174589 1542 82423069
chr12 65176137 65176155 IRF2 JASPAR yes 65174589 1548 82423070
chr12 65176138 65176159 IRF1 JASPAR yes 65174589 1549 82423071
chr12 65176141 65176154 ELF1 JASPAR yes 65174589 1552 82423072
chr12 65176141 65176155 SPI1 JASPAR yes 65174589 1552 82423073
chr12 65176141 65176155 SPIC JASPAR yes 65174589 1552 82423074
chr12 65176144 65176151 SPIB JASPAR yes 65174589 1555 82423075
chr12 65176155 65176162 SPI1 JASPAR yes 65174589 1566 82423076
chr12 65176169 65176184 FOXP1 JASPAR yes 65174589 1580 82423077
chr12 65176170 65176185 FOXP1 JASPAR yes 65174589 1581 82423078
chr12 65176171 65176186 FOXP1 JASPAR yes 65174589 1582 82423079
chr12 65176183 65176189 MZF1 JASPAR yes 65174589 1594 82423080
chr12 65176184 65176196 NHLH1 JASPAR yes 65174589 1595 82423081
chr12 65176185 65176195 TFAP4 JASPAR yes 65174589 1596 82423082
chr12 65176201 65176207 GATA3 JASPAR yes 65174589 1612 82423083
chr12 65176218 65176230 INSM1 JASPAR yes 65174589 1629 82423084
chr12 65176252 65176256 YY1 TRANSFAC yes 65174589 1663 82423085
chr12 65176257 65176261 YY1 TRANSFAC yes 65174589 1668 82423086
chr12 65176267 65176279 FOXI1 JASPAR yes 65174589 1678 82423087
chr12 65176270 65176274 YY1 TRANSFAC yes 65174589 1681 82423088
chr12 65176298 65176311 SCRT2 JASPAR yes 65174589 1709 82423089
chr12 65176307 65176323 ZNF143 JASPAR yes 65174589 1718 82423090
chr12 65176313 65176331 RARA JASPAR yes 65174589 1724 82423091
chr12 65176315 65176319 LFA1 TRANSFAC yes 65174589 1726 82423092
chr12 65176339 65176353 ONECUT1 JASPAR yes 65174589 1750 82423093
chr12 65176339 65176353 ONECUT2 JASPAR yes 65174589 1750 82423094
chr12 65176342 65176352 PAX3 JASPAR yes 65174589 1753 82423095
chr12 65176342 65176352 PAX7 JASPAR yes 65174589 1753 82423096
chr12 65176359 65176380 IRF1 JASPAR yes 65174589 1770 82423097
chr12 65176361 65176376 PRDM1 JASPAR yes 65174589 1772 82423098
chr12 65176363 65176368 H4TF1 TRANSFAC yes 65174589 1774 82423099
chr12 65176371 65176382 HOXC13 JASPAR yes 65174589 1782 82423100
chr12 65176384 65176400 POU4F3 JASPAR yes 65174589 1795 82423101
chr12 65176387 65176391 YY1 TRANSFAC yes 65174589 1798 82423102
chr12 65176411 65176416 TFAP2A TRANSFAC yes 65174589 1822 82423103
chr12 65176411 65176417 MZF1 JASPAR yes 65174589 1822 82423104
chr12 65176412 65176422 GSC2 JASPAR yes 65174589 1823 82423105
chr12 65176412 65176422 GSC JASPAR yes 65174589 1823 82423106
chr12 65176413 65176421 OTX1 JASPAR yes 65174589 1824 82423107
chr12 65176413 65176422 PITX3 JASPAR yes 65174589 1824 82423108
chr12 65176423 65176431 FEV JASPAR yes 65174589 1834 82423109
chr12 65176425 65176430 ETS2 TRANSFAC yes 65174589 1836 82423110
chr12 65176436 65176443 SPIB JASPAR yes 65174589 1847 82423111
chr12 65176445 65176451 NFIC JASPAR yes 65174589 1856 82423112
chr12 65176449 65176463 NR2F1 JASPAR yes 65174589 1860 82423113
chr12 65176472 65176475 MYB TRANSFAC yes 65174589 1883 82423114
chr12 65176484 65176487 MYB TRANSFAC yes 65174589 1895 82423115
chr12 65176494 65176505 FOXH1 JASPAR yes 65174589 1905 82423116
chr12 65176495 65176501 ZNF354C JASPAR yes 65174589 1906 82423117
chr12 65176498 65176503 H4TF1 TRANSFAC yes 65174589 1909 82423118
SNPs associated with TBC1D30[ENSG00000111490.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 64863191 rs79136929 G A 311398 Esophagus 0.0206321 2688658
chr12 64945227 rs141860974 G A 229362 Heart 0.0866524 2689072
chr12 65174387 rs557644750 C T 202 Pancreas 0.135526 2690748
chr12 64901154 rs7956852 G T 273435 Spleen 0.402791 2688713
chr12 64326166 rs57220531 C A,T 848423 Thyroid 0.0780434 2686220
chr12 65251184 rs2085309 A G 0 Adrenal 0.239196 2691165
Details of TBC1D30[ENSG00000111490.8]
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Genomic Location chr12:65174589-65274812[+]
TSS 65174589
Gene Name TBC1D30
Ensembl ID ENSG00000111490.8
ENTREZID 23329
Uniprot
F8VZ81
Q9Y2I9
Protein Name
TBC1 domain family member 30
Expression levels of TBC1D30[ENSG00000111490.8]
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