EnhancerDB
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Enhancers that regulate GCNT2[ENSG00000111846.11]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 10393875 10395072 vista1413 10492456 97384
VISTA
chr6 10403752 10404250 vista50767 10492456 88206
VISTA
chr6 10407432 10410045 vista1414 10492456 82411
VISTA
chr6 10407698 10407754 vista50768 10492456 84702
VISTA
chr6 10427776 10437827 enh23006 10492456 54629
Skin (Keratinocyte) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung (A549) Muscle (A673) Placenta Colon (HCT116)
chr6 10439199 10444095 enh23007 10492456 48361
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube)
chr6 10441526 10441791 vista50769 10492456 50665
VISTA
chr6 10448065 10456095 enh23008 10492456 36361
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Muscle (Myoblast)
chr6 10458287 10458428 vista50770 10492456 34028
VISTA
chr6 10461205 10468210 enh23009 10492456 24246
Bone Marrow (K562) Cervix (HeLa-S3) Prostate (RWPE1) Placenta Lung (PC-9) Neural Stem Cells (H9)
chr6 10469785 10473935 enh23010 10492456 18521
Placenta
chr6 10476739 10484515 enh90361 10492456 7941
Prostate (RWPE1) Lung (PC-9)
chr6 10508796 10514040 enh46070 10492456 16340
Muscle (Myotube) Stomach
chr6 10516025 10521395 enh23011 10492456 23569
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Muscle (A673) Placenta Lung (PC-9) Neural Stem Cells (H9)
chr6 10520494 10520618 vista50771 10492456 28038
VISTA
chr6 10522285 10526435 enh100460 10492456 29829
Uterus
chr6 10527425 10550312 enh8944 10492456 34969
Large Intestine Blood (OCI-LY7) Blood (GM12878) Blood (Karpas-422) Neural Stem Cells (H9) Heart
chr6 10552532 10552740 vista50772 10492456 60076
VISTA
chr6 10565425 10570115 enh55628 10492456 72969
Large Intestine Lung (A549)
chr6 10571645 10585903 enh66162 10492456 79189
Pancreas Neural Stem Cells (H9) Stomach Heart
chr6 10587786 10588136 vista50773 10492456 95330
VISTA
chr6 10589491 10589864 vista50774 10492456 97035
VISTA
chr6 10592093 10592386 vista50775 10492456 99637
VISTA
chr6 10592242 10601915 enh8945 10492456 99786
Prostate (PC-3) Esophagus Astrocyte Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Heart
Transcript facotrs that regulate GCNT2[ENSG00000111846.11]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with GCNT2[ENSG00000111846.11], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 10594880 rs9466895 T C 0 Esophagus 0.00336706 8825627
chr6 10301459 rs76418890 A G 190997 Heart 0.0627603 8822430
chr6 11412982 rs9380270 C T 783381 Heart 0.26155 8830779
chr6 10513955 rs3798745 G A 0 Pancreas 0.00994379 8824577
chr6 10473628 rs397712396 T TTTTG 18828 Breast 0.225238 8824171
chr6 10534811 rs6911448 G A,C 0 Spleen 0.000596375 8824847
chr6 10519890 rs707794 C A 0 Ovary 0.0736502 8824650
chr6 10528218 rs692986 T C 0 Thyroid 0.00022785 8824748
chr6 9785468 rs551793655 ATTATT A 706988 Liver 0.387374 8820330
chr6 10523826 rs1087924 G C 0 Lung 0.0121526 8824693
chr6 11264935 rs183443360 A G 635334 Adrenal 0.276752 8829127
Details of GCNT2[ENSG00000111846.11]
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Genomic Location chr6:10492456-10629601[+]
TSS 10492456
Gene Name GCNT2
Ensembl ID ENSG00000111846.11
ENTREZID 2651
Uniprot
Q8N0V5
Protein Name
N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase
Expression levels of GCNT2[ENSG00000111846.11]
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