EnhancerDB
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Enhancers that regulate VAMP4[ENSG00000117533.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 171612145 171618275 enh12368 171711387 93112
Esophagus Stomach Placenta Pancreas Muscle (Myotube) Uterus Heart
chr1 171630545 171637781 enh43077 171711387 73606
Esophagus Muscle (Myotube) Uterus Heart
chr1 171643925 171648075 enh111525 171711387 63312
Brain (SK-N-MC)
chr1 171652961 171653360 vista3870 171711387 58027
VISTA
chr1 171683105 171688055 enh61927 171711387 23332
Esophagus Uterus Brain (SK-N-MC) Heart
chr1 171712214 171712716 vista3871 171711387 827
VISTA
chr1 171714228 171714396 vista3872 171711387 2841
VISTA
chr1 171721474 171725842 enh43078 171711387 10087
Muscle (Myoblast) Muscle (Myotube) Neural Stem Cells (H9)
chr1 171729485 171733635 enh90737 171711387 18098
Bone Marrow (K562)
chr1 171767576 171777155 enh50044 171711387 56189
Large Intestine Colon (HCT116) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9)
chr1 171784505 171789435 enh12369 171711387 73118
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Astrocyte Placenta Uterus Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 171800665 171804815 enh74411 171711387 89278
Muscle (A673)
Transcript facotrs that regulate VAMP4[ENSG00000117533.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 171708335 171713372 AR GTRD no Prostate (PC-3) 171711387 1985 107845465
chr1 171711673 171712223 GATA2 UCSC Txn Factor no Conserved 171711387 286 107845466
chr1 171711673 171712223 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 171711387 286 107845467
chr1 171712191 171712587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 171711387 804 107845468
chr1 171712211 171712587 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 171711387 824 107845469
chr1 171712218 171712223 ETS2 TRANSFAC yes 171711387 831 118398003
chr1 171712219 171712233 STAT1 JASPAR yes 171711387 832 118398004
chr1 171712219 171712234 STAT2 JASPAR yes 171711387 832 118398005
chr1 171712223 171712228 ETS2 TRANSFAC yes 171711387 836 118398006
chr1 171712255 171712269 SPI1 JASPAR yes 171711387 868 118398007
chr1 171712257 171712547 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 171711387 870 107845470
chr1 171712264 171712270 TCF4 TRANSFAC yes 171711387 877 118398008
chr1 171712264 171712279 LEF1 JASPAR yes 171711387 877 118398009
chr1 171712265 171712279 TCF7L2 JASPAR yes 171711387 878 118398010
chr1 171712269 171712448 FOS UCSC Txn Factor no Conserved 171711387 882 107845471
chr1 171712270 171712285 FOXA1 JASPAR yes 171711387 883 118398011
chr1 171712270 171712654 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 171711387 883 107845472
chr1 171712271 171712283 FOXI1 JASPAR yes 171711387 884 118398012
chr1 171712272 171712284 FOXC2 JASPAR yes 171711387 885 118398013
chr1 171712272 171712286 FOXF2 JASPAR yes 171711387 885 118398014
chr1 171712273 171712281 FOXG1 JASPAR yes 171711387 886 118398015
chr1 171712273 171712284 FOXB1 JASPAR yes 171711387 886 118398016
chr1 171712273 171712284 FOXC1 JASPAR yes 171711387 886 118398017
chr1 171712274 171712285 FOXA1 JASPAR yes 171711387 887 118398018
chr1 171712274 171712289 MEF2A JASPAR yes 171711387 887 118398019
chr1 171712275 171712290 MEF2C JASPAR yes 171711387 888 118398020
chr1 171712276 171712288 MEF2A JASPAR yes 171711387 889 118398021
chr1 171712276 171712288 MEF2D JASPAR yes 171711387 889 118398022
chr1 171712277 171712287 MEF2A JASPAR yes 171711387 890 118398023
chr1 171712277 171712541 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 171711387 890 107845473
chr1 171712278 171712282 YY1 TRANSFAC yes 171711387 891 118398024
chr1 171712282 171712294 POU2F1 JASPAR yes 171711387 895 118398025
chr1 171712282 171712295 POU3F3 JASPAR yes 171711387 895 118398026
chr1 171712283 171712295 POU3F1 JASPAR yes 171711387 896 118398027
chr1 171712283 171712296 POU2F2 JASPAR yes 171711387 896 118398028
chr1 171712284 171712292 FOXL1 JASPAR yes 171711387 897 118398029
chr1 171712284 171712293 POU5F1B JASPAR yes 171711387 897 118398030
chr1 171712299 171712302 MYB TRANSFAC yes 171711387 912 118398031
chr1 171712300 171712315 IRF9 JASPAR yes 171711387 913 118398032
chr1 171712301 171712315 IRF8 JASPAR yes 171711387 914 118398033
chr1 171712308 171712320 PKNOX1 JASPAR yes 171711387 921 118398034
chr1 171712308 171712320 TGIF1 JASPAR yes 171711387 921 118398035
chr1 171712308 171712320 TGIF2 JASPAR yes 171711387 921 118398036
chr1 171712313 171712505 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 171711387 926 107845474
chr1 171712318 171712334 RFX5 JASPAR yes 171711387 931 118398037
chr1 171712343 171712354 FOS JASPAR yes 171711387 956 118398038
chr1 171712343 171712354 FOSL1 JASPAR yes 171711387 956 118398039
chr1 171712344 171712357 DUXA JASPAR yes 171711387 957 118398040
chr1 171712345 171712356 DUX4 JASPAR yes 171711387 958 118398041
chr1 171712360 171712366 JUN TRANSFAC yes 171711387 973 118398042
chr1 171712389 171712619 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 171711387 1002 107845475
chr1 171712393 171712402 HIC2 JASPAR yes 171711387 1006 118398043
chr1 171712394 171712650 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 171711387 1007 107845476
chr1 171712396 171712406 MAX JASPAR yes 171711387 1009 118398044
chr1 171712396 171712406 MNT JASPAR yes 171711387 1009 118398045
chr1 171712396 171712406 TFE3 JASPAR yes 171711387 1009 118398046
chr1 171712397 171712404 USF1 JASPAR yes 171711387 1010 118398047
chr1 171712397 171712407 MAX JASPAR yes 171711387 1010 118398048
chr1 171712398 171712403 MYC TRANSFAC yes 171711387 1011 118398049
chr1 171712398 171712403 USF1 TRANSFAC yes 171711387 1011 118398050
chr1 171712398 171712403 USF2 TRANSFAC yes 171711387 1011 118398051
chr1 171712417 171712661 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 171711387 1030 107845477
chr1 171712420 171712776 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 171711387 1033 107845478
chr1 171712441 171712451 MYF6 JASPAR yes 171711387 1054 118398052
chr1 171712458 171712463 MYC TRANSFAC yes 171711387 1071 118398053
chr1 171712463 171712476 HSF1 JASPAR yes 171711387 1076 118398054
chr1 171712463 171712476 HSF4 JASPAR yes 171711387 1076 118398055
chr1 171712470 171712980 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 171711387 1083 107845479
chr1 171712491 171712496 MYC TRANSFAC yes 171711387 1104 118398056
chr1 171712497 171712512 FOXA1 JASPAR yes 171711387 1110 118398057
chr1 171712498 171712513 FOXP1 JASPAR yes 171711387 1111 118398058
chr1 171712499 171712510 FOXP2 JASPAR yes 171711387 1112 118398059
chr1 171712499 171712511 FOXC2 JASPAR yes 171711387 1112 118398060
chr1 171712500 171712508 FOXG1 JASPAR yes 171711387 1113 118398061
chr1 171712501 171712512 FOXA1 JASPAR yes 171711387 1114 118398062
chr1 171712501 171712512 FOXH1 JASPAR yes 171711387 1114 118398063
chr1 171712521 171712525 NFE TRANSFAC yes 171711387 1134 118398064
chr1 171712524 171712542 MAFF JASPAR yes 171711387 1137 118398065
chr1 171712525 171712540 MAFK JASPAR yes 171711387 1138 118398066
chr1 171712529 171712540 NRL JASPAR yes 171711387 1142 118398067
chr1 171712529 171712550 REST JASPAR yes 171711387 1142 118398068
chr1 171712552 171712561 NKX3-2 JASPAR yes 171711387 1165 118398069
chr1 171712583 171712588 GATA2 JASPAR yes 171711387 1196 118398070
chr1 171712588 171712592 NFE TRANSFAC yes 171711387 1201 118398071
chr1 171712593 171712603 TBX21 JASPAR yes 171711387 1206 118398072
chr1 171712593 171712604 TBX20 JASPAR yes 171711387 1206 118398073
chr1 171712593 171712604 TBX2 JASPAR yes 171711387 1206 118398074
chr1 171712593 171712606 EOMES JASPAR yes 171711387 1206 118398075
chr1 171712594 171712602 MGA JASPAR yes 171711387 1207 118398076
chr1 171712594 171712602 TBX15 JASPAR yes 171711387 1207 118398077
chr1 171712594 171712602 TBX1 JASPAR yes 171711387 1207 118398078
chr1 171712594 171712602 TBX4 JASPAR yes 171711387 1207 118398079
chr1 171712594 171712602 TBX5 JASPAR yes 171711387 1207 118398080
chr1 171712594 171712604 TBR1 JASPAR yes 171711387 1207 118398081
chr1 171712605 171712618 NFKB2 JASPAR yes 171711387 1218 118398082
chr1 171712611 171712623 INSM1 JASPAR yes 171711387 1224 118398083
chr1 171712620 171712633 SCRT2 JASPAR yes 171711387 1233 118398084
chr1 171712620 171712635 SCRT1 JASPAR yes 171711387 1233 118398085
chr1 171712622 171712642 ESR1 JASPAR yes 171711387 1235 118398086
chr1 171712626 171712643 ESR1 JASPAR yes 171711387 1239 118398087
chr1 171712626 171712644 ESR2 JASPAR yes 171711387 1239 118398088
chr1 171712630 171712633 MYB TRANSFAC yes 171711387 1243 118398089
chr1 171712631 171712646 SOX21 JASPAR yes 171711387 1244 118398090
chr1 171712631 171712647 SOX4 JASPAR yes 171711387 1244 118398091
chr1 171712639 171712643 YY1 TRANSFAC yes 171711387 1252 118398092
chr1 171712642 171712646 YY1 TRANSFAC yes 171711387 1255 118398093
chr1 171712654 171712664 MSC JASPAR yes 171711387 1267 118398094
chr1 171712654 171712664 TFAP4 JASPAR yes 171711387 1267 118398095
chr1 171712659 171712680 IRF1 JASPAR yes 171711387 1272 118398096
chr1 171712662 171712677 FOXP1 JASPAR yes 171711387 1275 118398097
chr1 171712664 171712679 FOXP1 JASPAR yes 171711387 1277 118398098
chr1 171712665 171712680 FOXP1 JASPAR yes 171711387 1278 118398099
chr1 171712666 171712681 FOXP1 JASPAR yes 171711387 1279 118398100
chr1 171712667 171712682 FOXP1 JASPAR yes 171711387 1280 118398101
chr1 171712695 171712710 TFAP2C JASPAR yes 171711387 1308 118398102
chr1 171712697 171712709 INSM1 JASPAR yes 171711387 1310 118398103
chr1 171712697 171712712 TFAP2A JASPAR yes 171711387 1310 118398104
chr1 171712698 171712709 TFAP2A JASPAR yes 171711387 1311 118398105
chr1 171712698 171712709 TFAP2B JASPAR yes 171711387 1311 118398106
chr1 171712699 171712708 TFAP2A JASPAR yes 171711387 1312 118398107
chr1 171714244 171714265 IRF1 JASPAR yes 171711387 2857 118398108
chr1 171714252 171714266 ONECUT3 JASPAR yes 171711387 2865 118398109
chr1 171714266 171714271 H4TF1 TRANSFAC yes 171711387 2879 118398110
chr1 171714268 171714280 INSM1 JASPAR yes 171711387 2881 118398111
chr1 171714283 171714286 MYB TRANSFAC yes 171711387 2896 118398112
chr1 171714285 171714295 NFATC3 JASPAR yes 171711387 2898 118398113
chr1 171714287 171714294 NFATC2 JASPAR yes 171711387 2900 118398114
chr1 171714295 171714307 EHF JASPAR yes 171711387 2908 118398115
chr1 171714295 171714307 ELF1 JASPAR yes 171711387 2908 118398116
chr1 171714295 171714307 ELF4 JASPAR yes 171711387 2908 118398117
chr1 171714295 171714308 ELF3 JASPAR yes 171711387 2908 118398118
chr1 171714296 171714308 HINFP JASPAR yes 171711387 2909 118398119
chr1 171714297 171714307 ETV6 JASPAR yes 171711387 2910 118398120
chr1 171714298 171714308 HINFP JASPAR yes 171711387 2911 118398121
chr1 171714299 171714305 ETS1 JASPAR yes 171711387 2912 118398122
chr1 171714299 171714305 SPI1 JASPAR yes 171711387 2912 118398123
chr1 171714302 171714313 NFIL3 JASPAR yes 171711387 2915 118398124
chr1 171714303 171714315 DBP JASPAR yes 171711387 2916 118398125
chr1 171714303 171714315 HLF JASPAR yes 171711387 2916 118398126
chr1 171714303 171714315 TEF JASPAR yes 171711387 2916 118398127
chr1 171714305 171714316 NFIL3 JASPAR yes 171711387 2918 118398128
chr1 171714310 171714313 MYB TRANSFAC yes 171711387 2923 118398129
chr1 171714320 171714335 SOX21 JASPAR yes 171711387 2933 118398130
chr1 171714338 171714341 MYB TRANSFAC yes 171711387 2951 118398131
chr1 171714364 171714374 SREBF1 JASPAR yes 171711387 2977 118398132
chr1 171714364 171714374 SREBF2 JASPAR yes 171711387 2977 118398133
SNPs associated with VAMP4[ENSG00000117533.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 171710405 rs2298914 C T 0 Esophagus 4.6096e-07 725454
chr1 171720909 rs11577745 G C 9522 Heart 0.00417515 725530
chr1 171719954 rs11578723 C T 8567 Heart 0.0215621 725516
chr1 171719769 rs11578699 C T 8382 Breast 2.55289e-06 725513
chr1 171724645 rs78075821 C A 13258 Ovary 0.00834287 725575
chr1 171724645 rs78075821 C A 13258 Uterus 0.115432 725575
chr1 171719769 rs11578699 C T 8382 Liver 0.00064273 725513
chr1 171724645 rs78075821 C A 13258 Lung 4.38919e-06 725575
Details of VAMP4[ENSG00000117533.10]
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Genomic Location chr1:171669300-171711387[-]
TSS 171711387
Gene Name VAMP4
Ensembl ID ENSG00000117533.10
ENTREZID 8674
Uniprot
Q6IAZ3
O75379
Protein Name
VAMP4 protein
Vesicle-associated membrane protein 4
Expression levels of VAMP4[ENSG00000117533.10]
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