EnhancerDB
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Enhancers that regulate CLIP1[ENSG00000130779.15]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 122849366 122861555 enh15067 122907179 45624
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Adrenal Uterus Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 122865465 122872467 enh2660 122907179 34712
Neural Stem Cells (H9) Uterus Blood (Karpas-422)
chr12 122876465 122893791 enh15068 122907179 13388
Liver (HepG2) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Muscle (A673) Placenta Colon (HCT116) Pancreas (Panc1) Spleen Uterus Stomach
chr12 122894985 122900455 enh60428 122907179 6724
Muscle (A673) Uterus Blood (T-cell) Blood (OCI-LY7)
chr12 122897459 122897572 vista15206 122907179 9607
VISTA
chr12 122908043 122908483 vista15207 122907179 864
VISTA
chr12 122914065 122918215 enh96368 122907179 6886
Epithelial (MCF-7)
chr12 122920058 122925615 enh15069 122907179 12879
Ovary Esophagus Placenta Thyroid Lung (PC-9) Muscle (Myotube)
chr12 122929045 122955735 enh15070 122907179 21866
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Blood (OCI-LY7) Placenta Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myoblast) Thymus Epithelial (MCF-7)
chr12 122952702 122952803 vista15208 122907179 45523
VISTA
chr12 122968405 122973815 enh2661 122907179 61226
Liver (HepG2) Cervix (HeLa-S3) Muscle (A673) Blood (Karpas-422) Epithelial (MCF-7)
Transcript facotrs that regulate CLIP1[ENSG00000130779.15]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 122905767 122908923 POLR2A UCSC Txn Factor no Conserved 122907179 1412 108065889
chr12 122907486 122908062 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 122907179 307 108065890
chr12 122907717 122908161 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 122907179 538 108065891
chr12 122907759 122908359 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 122907179 580 108065892
chr12 122907813 122908463 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 122907179 634 108065893
chr12 122907814 122908334 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 122907179 635 108065894
chr12 122907898 122908388 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 122907179 719 108065895
chr12 122908016 122908406 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 837 108065896
chr12 122908021 122908421 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 842 108065897
chr12 122908027 122908337 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 122907179 848 108065898
chr12 122908031 122908347 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 122907179 852 108065899
chr12 122908061 122908072 EBF1 JASPAR yes 122907179 882 82491616
chr12 122908067 122908443 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 122907179 888 108065900
chr12 122908067 122908659 TBP UCSC Txn Factor no Conserved 122907179 888 108065901
chr12 122908069 122908075 PEA3 TRANSFAC yes 122907179 890 82491617
chr12 122908070 122908080 TEAD1 JASPAR yes 122907179 891 82491618
chr12 122908070 122908080 TEAD4 JASPAR yes 122907179 891 82491619
chr12 122908071 122908347 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 122907179 892 108065902
chr12 122908076 122908296 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 122907179 897 108065903
chr12 122908078 122908088 ID4 JASPAR yes 122907179 899 82491620
chr12 122908083 122908087 NFE TRANSFAC yes 122907179 904 82491621
chr12 122908087 122908100 NFKB1 JASPAR yes 122907179 908 82491622
chr12 122908088 122908099 NFKB1 JASPAR yes 122907179 909 82491623
chr12 122908089 122908094 ETS2 TRANSFAC yes 122907179 910 82491624
chr12 122908089 122908099 RELA JASPAR yes 122907179 910 82491625
chr12 122908099 122908114 RUNX2 JASPAR yes 122907179 920 82491626
chr12 122908104 122908380 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 925 108065904
chr12 122908108 122908129 ZNF263 JASPAR yes 122907179 929 82491627
chr12 122908108 122908312 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 929 108065905
chr12 122908109 122908115 ZNF354C JASPAR yes 122907179 930 82491628
chr12 122908111 122908116 GATA2 JASPAR yes 122907179 932 82491629
chr12 122908117 122908127 SP1 JASPAR yes 122907179 938 82491630
chr12 122908118 122908128 SP1 JASPAR yes 122907179 939 82491631
chr12 122908118 122908408 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 122907179 939 108065906
chr12 122908119 122908123 LFA1 TRANSFAC yes 122907179 940 82491632
chr12 122908124 122908134 NFKB1 JASPAR yes 122907179 945 82491633
chr12 122908126 122908139 ELF1 JASPAR yes 122907179 947 82491634
chr12 122908161 122908166 SP1 TRANSFAC yes 122907179 982 82491635
chr12 122908161 122908295 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 122907179 982 108065907
chr12 122908163 122908176 NR2F1 JASPAR yes 122907179 984 82491636
chr12 122908169 122908186 RARA JASPAR yes 122907179 990 82491637
chr12 122908169 122908186 RXRA JASPAR yes 122907179 990 82491638
chr12 122908176 122908189 NR2F1 JASPAR yes 122907179 997 82491639
chr12 122908178 122908189 ESRRA JASPAR yes 122907179 999 82491640
chr12 122908179 122908187 NR4A2 JASPAR yes 122907179 1000 82491641
chr12 122908180 122908190 RORA JASPAR yes 122907179 1001 82491642
chr12 122908189 122908195 TCF1 TRANSFAC yes 122907179 1010 82491643
chr12 122908189 122908196 TCF4 TRANSFAC yes 122907179 1010 82491644
chr12 122908196 122908201 MYC TRANSFAC yes 122907179 1017 82491645
chr12 122908199 122908463 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 122907179 1020 108065908
chr12 122908209 122908589 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 122907179 1030 108065909
chr12 122908212 122908225 ELF1 JASPAR yes 122907179 1033 82491646
chr12 122908215 122908225 GABPA JASPAR yes 122907179 1036 82491647
chr12 122908215 122908226 ELK4 JASPAR yes 122907179 1036 82491648
chr12 122908215 122908226 FLI1 JASPAR yes 122907179 1036 82491649
chr12 122908256 122908268 POU2F1 JASPAR yes 122907179 1077 82491650
chr12 122908256 122908269 POU3F3 JASPAR yes 122907179 1077 82491651
chr12 122908256 122908270 POU1F1 JASPAR yes 122907179 1077 82491652
chr12 122908257 122908269 POU3F1 JASPAR yes 122907179 1078 82491653
chr12 122908257 122908269 POU3F2 JASPAR yes 122907179 1078 82491654
chr12 122908257 122908270 POU2F2 JASPAR yes 122907179 1078 82491655
chr12 122908258 122908266 FOXL1 JASPAR yes 122907179 1079 82491656
chr12 122908258 122908267 POU3F4 JASPAR yes 122907179 1079 82491657
chr12 122908258 122908267 POU5F1B JASPAR yes 122907179 1079 82491658
chr12 122908258 122908269 FOXB1 JASPAR yes 122907179 1079 82491659
chr12 122908267 122908288 ZNF263 JASPAR yes 122907179 1088 82491660
chr12 122908270 122908291 ZNF263 JASPAR yes 122907179 1091 82491661
chr12 122908278 122908284 SP1 TRANSFAC yes 122907179 1099 82491662
chr12 122908278 122908288 SP1 JASPAR yes 122907179 1099 82491663
chr12 122908281 122908745 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 122907179 1102 108065910
chr12 122908299 122908659 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 122907179 1120 108065911
chr12 122908341 122908988 ZNF143 GTRD no Epithelial (MCF-7) 122907179 1162 108065912
chr12 122908353 122908364 ESRRA JASPAR yes 122907179 1174 82491664
chr12 122908353 122908364 ESRRB JASPAR yes 122907179 1174 82491665
chr12 122908353 122908366 NR2F1 JASPAR yes 122907179 1174 82491666
chr12 122908355 122908363 NR4A2 JASPAR yes 122907179 1176 82491667
chr12 122908357 122908361 ESR1 TRANSFAC yes 122907179 1178 82491668
chr12 122908357 122908368 USF1 JASPAR yes 122907179 1178 82491669
chr12 122908358 122908368 SREBF2 JASPAR yes 122907179 1179 82491670
chr12 122908362 122908374 ZBTB7C JASPAR yes 122907179 1183 82491671
chr12 122908367 122908677 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 122907179 1188 108065913
chr12 122908376 122908559 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1197 108065914
chr12 122908379 122908749 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1200 108065915
chr12 122908386 122908579 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1207 108065916
chr12 122908389 122908394 GATA2 JASPAR yes 122907179 1210 82491672
chr12 122908389 122908678 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1210 108065917
chr12 122908394 122908810 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1215 108065918
chr12 122908409 122908896 ZNF274 GTRD no Liver (HepG2) 122907179 1230 108065919
chr12 122908430 122908438 FOXO3 JASPAR yes 122907179 1251 82491673
chr12 122908448 122908467 PAX5 JASPAR yes 122907179 1269 82491674
chr12 122908461 122908472 FOXH1 JASPAR yes 122907179 1282 82491675
chr12 122908468 122908480 PKNOX1 JASPAR yes 122907179 1289 82491676
chr12 122908468 122908480 PKNOX2 JASPAR yes 122907179 1289 82491677
chr12 122908468 122908480 TGIF1 JASPAR yes 122907179 1289 82491678
chr12 122908468 122908480 TGIF2 JASPAR yes 122907179 1289 82491679
chr12 122908480 122908674 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 122907179 1301 108065920
SNPs associated with CLIP1[ENSG00000130779.15], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 122869102 rs10773108 A G 0 Esophagus 0.00618804 2957953
chr12 122947265 rs7316114 A G 40086 Esophagus 0.0854226 2958758
chr12 121997091 rs79196021 T C 758888 Spleen 0.273837 2952928
chr12 122931065 rs11058178 G A,C 23886 Stomach 0.0032264 2958538
chr12 122041132 rs141046492 G C 714847 Adrenal 0.27883 2953440
Details of CLIP1[ENSG00000130779.15]
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Genomic Location chr12:122755979-122907179[-]
TSS 122907179
Gene Name CLIP1
Ensembl ID ENSG00000130779.15
ENTREZID 6249
Uniprot
B3KXA5
A0A024RBR1
P30622
Protein Name
CAP-Gly domain-containing linker protein 1
CLIP1 protein
Expression levels of CLIP1[ENSG00000130779.15]
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