EnhancerDB
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Enhancers that regulate HNF1A[ENSG00000135100.13]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 121314954 121319150 enh58486 121416346 97196
Skin (Keratinocyte)
chr12 121322000 121326515 enh2643 121416346 89831
Thymus Blood (GM12878) Peripheral Blood (MM.1S) Blood (Karpas-422) Blood (T-cell)
chr12 121322345 121322363 vista15140 121416346 93983
VISTA
chr12 121327685 121332295 enh94195 121416346 84051
Spleen Ovary
chr12 121334325 121338475 enh2644 121416346 77871
Blood (Karpas-422)
chr12 121347564 121347960 vista15141 121416346 68386
VISTA
chr12 121350488 121355090 enh15049 121416346 61256
Esophagus Skin (Keratinocyte) Placenta Prostate (RWPE1)
chr12 121361505 121369371 enh15050 121416346 46975
Skin (Keratinocyte) Prostate (PC-3) Large Intestine Placenta Lung (PC-9) Pancreas Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 121366513 121366710 vista15142 121416346 49636
VISTA
chr12 121367131 121367281 vista15143 121416346 49065
VISTA
chr12 121372125 121379595 enh15051 121416346 36751
Placenta
chr12 121389643 121407095 enh15052 121416346 9251
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Esophagus Stomach Muscle (A673) Placenta Colon (HCT116) Lung (PC-9) Thymus Epithelial (MCF-7)
chr12 121402785 121402795 vista15144 121416346 13551
VISTA
chr12 121420285 121424455 enh51428 121416346 3939
Liver (HepG2) Large Intestine
chr12 121425440 121425755 vista15145 121416346 9094
VISTA
chr12 121460445 121464595 enh109581 121416346 44099
Stomach
chr12 121460857 121460983 vista15146 121416346 44511
VISTA
chr12 121462488 121462659 vista15147 121416346 46142
VISTA
chr12 121469743 121474053 enh43842 121416346 53397
Muscle (Myoblast) Muscle (Myotube)
chr12 121471797 121472025 vista15148 121416346 55451
VISTA
chr12 121495465 121501975 enh99043 121416346 79119
Cervix (HeLa-S3) Lung Lung (PC-9) Pancreas (Panc1) Uterus
chr12 121497390 121497638 vista15149 121416346 81044
VISTA
chr12 121498035 121498283 vista15150 121416346 81689
VISTA
Transcript facotrs that regulate HNF1A[ENSG00000135100.13]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 121420288 121420294 MZF1 JASPAR yes 121416346 3942 124200180
chr12 121420316 121420325 PITX3 JASPAR yes 121416346 3970 124200181
chr12 121420316 121420326 GSC2 JASPAR yes 121416346 3970 124200182
chr12 121420316 121420326 GSC JASPAR yes 121416346 3970 124200183
chr12 121420317 121420325 OTX2 JASPAR yes 121416346 3971 124200184
chr12 121420329 121420335 NFE2 TRANSFAC yes 121416346 3983 124200185
chr12 121420339 121420354 TP53 JASPAR yes 121416346 3993 124200186
chr12 121420347 121420357 FIGLA JASPAR yes 121416346 4001 124200187
chr12 121420417 121420431 RXRB JASPAR yes 121416346 4071 124200188
chr12 121420417 121420431 RXRG JASPAR yes 121416346 4071 124200189
chr12 121420420 121420430 BARHL2 JASPAR yes 121416346 4074 124200190
chr12 121420431 121420446 SCRT1 JASPAR yes 121416346 4085 124200191
chr12 121420439 121420453 FOXF2 JASPAR yes 121416346 4093 124200192
chr12 121420440 121420451 FOXA1 JASPAR yes 121416346 4094 124200193
chr12 121420440 121420455 FOXA1 JASPAR yes 121416346 4094 124200194
chr12 121420441 121420452 FOXB1 JASPAR yes 121416346 4095 124200195
chr12 121420441 121420452 FOXC1 JASPAR yes 121416346 4095 124200196
chr12 121420441 121420453 FOXC2 JASPAR yes 121416346 4095 124200197
chr12 121420442 121420453 FOXP2 JASPAR yes 121416346 4096 124200198
chr12 121420444 121420451 FOXD2 JASPAR yes 121416346 4098 124200199
chr12 121420444 121420451 FOXI1 JASPAR yes 121416346 4098 124200200
chr12 121420444 121420451 FOXL1 JASPAR yes 121416346 4098 124200201
chr12 121420444 121420451 FOXO4 JASPAR yes 121416346 4098 124200202
chr12 121420444 121420451 FOXO6 JASPAR yes 121416346 4098 124200203
chr12 121420444 121420451 FOXP3 JASPAR yes 121416346 4098 124200204
chr12 121420444 121420452 FOXD1 JASPAR yes 121416346 4098 124200205
chr12 121420444 121420452 FOXG1 JASPAR yes 121416346 4098 124200206
chr12 121420444 121420452 FOXO3 JASPAR yes 121416346 4098 124200207
chr12 121420456 121420459 MYB TRANSFAC yes 121416346 4110 124200208
chr12 121420474 121420486 MEF2A JASPAR yes 121416346 4128 124200209
chr12 121420474 121420486 MEF2B JASPAR yes 121416346 4128 124200210
chr12 121420474 121420486 MEF2D JASPAR yes 121416346 4128 124200211
chr12 121420475 121420485 MEF2A JASPAR yes 121416346 4129 124200212
chr12 121420480 121420495 JUND JASPAR yes 121416346 4134 124200213
chr12 121420491 121420495 YY1 TRANSFAC yes 121416346 4145 124200214
chr12 121420505 121420515 NOTO JASPAR yes 121416346 4159 124200215
chr12 121420561 121420581 TP53 JASPAR yes 121416346 4215 124200216
chr12 121420563 121420583 TP63 JASPAR yes 121416346 4217 124200217
chr12 121420564 121420582 TP53 JASPAR yes 121416346 4218 124200218
chr12 121420564 121420582 TP63 JASPAR yes 121416346 4218 124200219
chr12 121420564 121420582 TP73 JASPAR yes 121416346 4218 124200220
chr12 121420565 121420580 TP53 JASPAR yes 121416346 4219 124200221
chr12 121420571 121420586 HNF4A JASPAR yes 121416346 4225 124200222
chr12 121420586 121420590 H4TF2 TRANSFAC yes 121416346 4240 124200223
chr12 121420589 121420610 ZNF263 JASPAR yes 121416346 4243 124200224
chr12 121420617 121420627 RORA JASPAR yes 121416346 4271 124200225
chr12 121420618 121420629 ESRRA JASPAR yes 121416346 4272 124200226
chr12 121420620 121420628 NR4A2 JASPAR yes 121416346 4274 124200227
chr12 121420620 121420633 EOMES JASPAR yes 121416346 4274 124200228
chr12 121420621 121420636 ESR2 JASPAR yes 121416346 4275 124200229
chr12 121420622 121420626 ESR1 TRANSFAC yes 121416346 4276 124200230
chr12 121420623 121420633 TBX21 JASPAR yes 121416346 4277 124200231
chr12 121420624 121420632 MGA JASPAR yes 121416346 4278 124200232
chr12 121420624 121420632 TBX15 JASPAR yes 121416346 4278 124200233
chr12 121420624 121420632 TBX1 JASPAR yes 121416346 4278 124200234
chr12 121420624 121420632 TBX4 JASPAR yes 121416346 4278 124200235
chr12 121420624 121420632 TBX5 JASPAR yes 121416346 4278 124200236
chr12 121420626 121420641 PRDM1 JASPAR yes 121416346 4280 124200237
chr12 121420626 121420641 STAT2 JASPAR yes 121416346 4280 124200238
chr12 121420629 121420650 ZNF263 JASPAR yes 121416346 4283 124200239
chr12 121420630 121420640 MZF1 JASPAR yes 121416346 4284 124200240
chr12 121420633 121420639 SP1 TRANSFAC yes 121416346 4287 124200241
chr12 121420633 121420643 SP1 JASPAR yes 121416346 4287 124200242
chr12 121420637 121420643 MZF1 JASPAR yes 121416346 4291 124200243
chr12 121420696 121420713 RXRA JASPAR yes 121416346 4350 124200244
chr12 121420701 121420707 SOX10 JASPAR yes 121416346 4355 124200245
chr12 121420727 121420748 ZNF263 JASPAR yes 121416346 4381 124200246
chr12 121420729 121420733 YY1 TRANSFAC yes 121416346 4383 124200247
chr12 121420732 121420753 ZNF263 JASPAR yes 121416346 4386 124200248
chr12 121420733 121420754 ZNF263 JASPAR yes 121416346 4387 124200249
chr12 121420742 121420748 MZF1 JASPAR yes 121416346 4396 124200250
chr12 121420767 121420771 YY1 TRANSFAC yes 121416346 4421 124200251
chr12 121420776 121420780 YY1 TRANSFAC yes 121416346 4430 124200252
chr12 121420789 121420795 ETS1 JASPAR yes 121416346 4443 124200253
chr12 121420840 121420854 GLIS2 JASPAR yes 121416346 4494 124200254
chr12 121420840 121420854 GLIS3 JASPAR yes 121416346 4494 124200255
chr12 121420840 121420854 ZIC1 JASPAR yes 121416346 4494 124200256
chr12 121420840 121420855 ZIC4 JASPAR yes 121416346 4494 124200257
chr12 121420863 121420869 SP1 TRANSFAC yes 121416346 4517 124200258
chr12 121420865 121420878 ZBTB18 JASPAR yes 121416346 4519 124200259
chr12 121420910 121420921 EBF1 JASPAR yes 121416346 4564 124200260
chr12 121420914 121420929 HNF4G JASPAR yes 121416346 4568 124200261
chr12 121420915 121420920 SP1 TRANSFAC yes 121416346 4569 124200262
chr12 121420915 121420929 RXRB JASPAR yes 121416346 4569 124200263
chr12 121420915 121420929 RXRG JASPAR yes 121416346 4569 124200264
chr12 121420915 121420930 HNF4A JASPAR yes 121416346 4569 124200265
chr12 121420916 121420931 TFAP2C JASPAR yes 121416346 4570 124200266
chr12 121420924 121420928 LFA1 TRANSFAC yes 121416346 4578 124200267
chr12 121420945 121420962 RARA JASPAR yes 121416346 4599 124200268
chr12 121420946 121420956 ETV3 JASPAR yes 121416346 4600 124200269
chr12 121420952 121420965 NR2F1 JASPAR yes 121416346 4606 124200270
chr12 121420954 121420965 ESRRA JASPAR yes 121416346 4608 124200271
chr12 121420966 121420987 ZNF263 JASPAR yes 121416346 4620 124200272
chr12 121420967 121420988 ZNF263 JASPAR yes 121416346 4621 124200273
chr12 121420976 121420997 ZNF263 JASPAR yes 121416346 4630 124200274
chr12 121420979 121421000 ZNF263 JASPAR yes 121416346 4633 124200275
chr12 121420982 121420988 PEA3 TRANSFAC yes 121416346 4636 124200276
chr12 121420994 121420999 SP1 TRANSFAC yes 121416346 4648 124200277
chr12 121420995 121421000 SP1 TRANSFAC yes 121416346 4649 124200278
chr12 121421008 121421019 EBF1 JASPAR yes 121416346 4662 124200279
chr12 121421028 121421043 HNF4G JASPAR yes 121416346 4682 124200280
chr12 121421029 121421034 SP1 TRANSFAC yes 121416346 4683 124200281
chr12 121421029 121421043 RXRB JASPAR yes 121416346 4683 124200282
chr12 121421029 121421043 RXRG JASPAR yes 121416346 4683 124200283
chr12 121421029 121421044 HNF4A JASPAR yes 121416346 4683 124200284
chr12 121421039 121421050 EBF1 JASPAR yes 121416346 4693 124200285
chr12 121421053 121421062 SRY JASPAR yes 121416346 4707 124200286
chr12 121421086 121421094 HOXA5 JASPAR yes 121416346 4740 124200287
chr12 121421087 121421105 MAFF JASPAR yes 121416346 4741 124200288
chr12 121421088 121421103 MAFK JASPAR yes 121416346 4742 124200289
chr12 121421138 121421142 YY1 TRANSFAC yes 121416346 4792 124200290
chr12 121421149 121421153 YY1 TRANSFAC yes 121416346 4803 124200291
chr12 121421157 121421168 STAT3 JASPAR yes 121416346 4811 124200292
chr12 121421183 121421189 ZNF354C JASPAR yes 121416346 4837 124200293
chr12 121421203 121421216 ZBTB18 JASPAR yes 121416346 4857 124200294
chr12 121421203 121421220 RARA JASPAR yes 121416346 4857 124200295
chr12 121421204 121421208 LFA1 TRANSFAC yes 121416346 4858 124200296
chr12 121421207 121421221 RORA JASPAR yes 121416346 4861 124200297
chr12 121421210 121421220 RORA JASPAR yes 121416346 4864 124200298
chr12 121421213 121421219 ESR1 TRANSFAC yes 121416346 4867 124200299
chr12 121421215 121421219 ESR1 TRANSFAC yes 121416346 4869 124200300
chr12 121421215 121421232 PAX1 JASPAR yes 121416346 4869 124200301
chr12 121421215 121421232 PAX9 JASPAR yes 121416346 4869 124200302
chr12 121421215 121421235 TP63 JASPAR yes 121416346 4869 124200303
chr12 121421216 121421234 TP53 JASPAR yes 121416346 4870 124200304
chr12 121421216 121421234 TP63 JASPAR yes 121416346 4870 124200305
chr12 121421218 121421233 TP53 JASPAR yes 121416346 4872 124200306
chr12 121421235 121421246 NFE2L2 JASPAR yes 121416346 4889 124200307
chr12 121421240 121421244 ESR1 TRANSFAC yes 121416346 4894 124200308
chr12 121421249 121421254 SP1 TRANSFAC yes 121416346 4903 124200309
chr12 121421284 121421293 VENTX JASPAR yes 121416346 4938 124200310
chr12 121421287 121421291 YY1 TRANSFAC yes 121416346 4941 124200311
chr12 121421301 121421321 TP53 JASPAR yes 121416346 4955 124200312
chr12 121421328 121421349 IRF1 JASPAR yes 121416346 4982 124200313
chr12 121421330 121421345 STAT2 JASPAR yes 121416346 4984 124200314
chr12 121421331 121421345 STAT1 JASPAR yes 121416346 4985 124200315
chr12 121421331 121421352 ZNF263 JASPAR yes 121416346 4985 124200316
chr12 121421333 121421354 IRF1 JASPAR yes 121416346 4987 124200317
chr12 121421335 121421340 ETS2 TRANSFAC yes 121416346 4989 124200318
chr12 121421335 121421350 PRDM1 JASPAR yes 121416346 4989 124200319
chr12 121421335 121421356 ZNF263 JASPAR yes 121416346 4989 124200320
chr12 121421337 121421358 IRF1 JASPAR yes 121416346 4991 124200321
chr12 121421339 121421360 IRF1 JASPAR yes 121416346 4993 124200322
chr12 121421343 121421364 IRF1 JASPAR yes 121416346 4997 124200323
chr12 121421345 121421360 PRDM1 JASPAR yes 121416346 4999 124200324
chr12 121421345 121421360 STAT2 JASPAR yes 121416346 4999 124200325
chr12 121421346 121421360 SPIC JASPAR yes 121416346 5000 124200326
chr12 121421346 121421360 STAT1 JASPAR yes 121416346 5000 124200327
SNPs associated with HNF1A[ENSG00000135100.13], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 121728824 rs59373781 C T 288509 Pancreas 0.410512 2951407
chr12 122332616 rs34149356 C T 892301 Ovary 0.427928 2955672
chr12 121731228 rs201159818 GGAA G 290913 Uterus 0.483453 2951448
chr12 121058539 rs11065173 C A 357807 Liver 0.295631 2946871
chr12 121349517 rs149651823 T G 66829 Stomach 0.140936 2948904
Details of HNF1A[ENSG00000135100.13]
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Genomic Location chr12:121416346-121440315[+]
TSS 121416346
Gene Name HNF1A
Ensembl ID ENSG00000135100.13
ENTREZID 6927
Uniprot
P20823
E0YMI7
Protein Name
HNF1 alpha A splice variant 1
HNF1 alpha A splice variant 2
HNF1 alpha A splice variant 3
HNF1 alpha A splice variant 4
HNF1 alpha A splice variant 5
HNF1 alpha A splice variant 6
HNF1 alpha A splice variant 7
HNF1 alpha A splice variant 8
HNF1 alpha B splice variant 3
HNF1 alpha B splice variant 6
Hepatocyte nuclear factor 1-alpha
Expression levels of HNF1A[ENSG00000135100.13]
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