EnhancerDB
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Enhancers that regulate NHSL1[ENSG00000135540.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 138901805 138924570 enh23678 139013708 89138
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Placenta Peripheral Blood (MM.1S) Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr6 138914049 138914108 vista53806 139013708 99600
VISTA
chr6 138914342 138914559 vista53807 139013708 99149
VISTA
chr6 138927725 138934255 enh23679 139013708 79453
Astrocyte Placenta Liver (HepG2)
chr6 138962345 138987884 enh23680 139013708 25824
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
chr6 138988625 138996675 enh23681 139013708 17033
Placenta Neural Stem Cells (H9)
chr6 138999405 139008735 enh23682 139013708 4973
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Esophagus Astrocyte Bone (Osteoblast) Muscle (A673) Placenta Muscle (Myoblast) Pancreas (Panc1)
chr6 139038205 139046335 enh23683 139013708 24497
Astrocyte Placenta Brain (SK-N-MC) Stomach
chr6 139100392 139100553 vista53808 139013708 86684
VISTA
Transcript facotrs that regulate NHSL1[ENSG00000135540.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 139008697 139008708 DMRT3 JASPAR yes 139013708 5000 105748203
chr6 139008702 139008712 GSX2 JASPAR yes 139013708 4996 105748204
chr6 139008702 139008712 LBX2 JASPAR yes 139013708 4996 105748205
chr6 139008702 139008712 MIXL1 JASPAR yes 139013708 4996 105748206
chr6 139008702 139008712 MNX1 JASPAR yes 139013708 4996 105748207
chr6 139008702 139008712 RAX JASPAR yes 139013708 4996 105748208
chr6 139008703 139008711 ISX JASPAR yes 139013708 4997 105748209
chr6 139008703 139008711 LHX9 JASPAR yes 139013708 4997 105748210
chr6 139008703 139008711 LMX1B JASPAR yes 139013708 4997 105748211
chr6 139008703 139008711 PRRX1 JASPAR yes 139013708 4997 105748212
chr6 139008703 139008711 RAX2 JASPAR yes 139013708 4997 105748213
chr6 139008703 139008711 SHOX JASPAR yes 139013708 4997 105748214
chr6 139008703 139008711 UNCX JASPAR yes 139013708 4997 105748215
chr6 139008705 139008720 HNF1A JASPAR yes 139013708 4988 105748216
chr6 139008726 139008730 TEAD2 TRANSFAC yes 139013708 4978 105748217
SNPs associated with NHSL1[ENSG00000135540.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 139835341 rs187514637 G C 821633 Esophagus 0.263451 9384431
chr6 138305662 rs12199300 C T 437518 Heart 0.297611 9374676
chr6 139644609 rs369699615 CG C 630901 Heart 0.246853 9382531
chr6 138851347 rs6919935 C T 0 Pancreas 1.19532e-05 9377861
chr6 139648282 rs9403059 A G 634574 Breast 0.355899 9382590
chr6 138862574 rs12200595 G T 0 Uterus 0.299205 9377971
chr6 138844566 rs11758715 C T 0 Stomach 1.44372e-07 9377779
Details of NHSL1[ENSG00000135540.7]
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Genomic Location chr6:138743180-139013708[-]
TSS 139013708
Gene Name NHSL1
Ensembl ID ENSG00000135540.7
ENTREZID 57224
Uniprot
Q5SYE7
Protein Name
NHS-like protein 1
Expression levels of NHSL1[ENSG00000135540.7]
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