EnhancerDB
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  3. RTP4[ENSG00000136514.2]
Enhancers that regulate RTP4[ENSG00000136514.2]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr3 186979185 186986555 enh65797 187086120 99565
Stomach Cervix (HeLa-S3) Heart
chr3 186989165 186993315 enh93247 187086120 92805
Liver (HepG2)
chr3 186997085 187001455 enh21183 187086120 84665
Placenta
chr3 187002385 187008755 enh100129 187086120 77365
Uterus
chr3 187004502 187004623 vista43500 187086120 81497
VISTA
chr3 187011848 187012020 vista43501 187086120 74100
VISTA
chr3 187015485 187019635 enh54533 187086120 66485
Large Intestine
chr3 187020645 187025935 enh100130 187086120 60185
Uterus
chr3 187026885 187031035 enh100131 187086120 55085
Uterus
chr3 187034445 187043135 enh36230 187086120 42985
Cervix (HeLa-S3) Ovary Large Intestine Astrocyte Pancreas (Panc1) Uterus
chr3 187059585 187063735 enh100132 187086120 22385
Uterus
chr3 187068565 187073397 enh54534 187086120 12723
Pancreas (Panc1) Prostate (PC-3) Large Intestine
chr3 187076038 187080775 enh71036 187086120 5345
Thyroid Neural Stem Cells (H9)
chr3 187086881 187087203 vista43502 187086120 761
VISTA
chr3 187117765 187124147 enh36231 187086120 31645
Prostate (PC-3) Cervix (HeLa-S3) Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Kidney
chr3 187181971 187186121 enh71037 187086120 95851
Neural Stem Cells (H9)
Transcript facotrs that regulate RTP4[ENSG00000136514.2]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr3 187086885 187086897 PBX1 JASPAR yes 187086120 765 71101451
chr3 187086902 187086923 IRF1 JASPAR yes 187086120 782 71101452
chr3 187086949 187086970 ZNF263 JASPAR yes 187086120 829 71101453
chr3 187086950 187086961 FOSL1 JASPAR yes 187086120 830 71101454
chr3 187086951 187086962 FOSL2 JASPAR yes 187086120 831 71101455
chr3 187086951 187086962 JUNB JASPAR yes 187086120 831 71101456
chr3 187086951 187086965 JUN JASPAR yes 187086120 831 71101457
chr3 187086953 187086961 FOXC1 JASPAR yes 187086120 833 71101458
chr3 187086960 187086974 SPI1 JASPAR yes 187086120 840 71101459
chr3 187086972 187086975 MYB TRANSFAC yes 187086120 852 71101460
chr3 187086973 187086987 GLIS2 JASPAR yes 187086120 853 71101461
chr3 187086983 187087002 CTCF JASPAR yes 187086120 863 71101462
chr3 187086999 187087011 GRHL1 JASPAR yes 187086120 879 71101463
chr3 187087000 187087010 TFCP2 JASPAR yes 187086120 880 71101464
chr3 187087008 187087013 ETS2 TRANSFAC yes 187086120 888 71101465
chr3 187087031 187087049 MAFF JASPAR yes 187086120 911 71101466
chr3 187087033 187087044 NRL JASPAR yes 187086120 913 71101467
chr3 187087033 187087048 MAFK JASPAR yes 187086120 913 71101468
chr3 187087039 187087053 RORA JASPAR yes 187086120 919 71101469
chr3 187087040 187087050 RORA JASPAR yes 187086120 920 71101470
chr3 187087046 187087051 GATA2 JASPAR yes 187086120 926 71101471
chr3 187087049 187087060 PHOX2A JASPAR yes 187086120 929 71101472
chr3 187087049 187087060 PROP1 JASPAR yes 187086120 929 71101473
chr3 187087055 187087070 MEF2A JASPAR yes 187086120 935 71101474
chr3 187087056 187087071 MEF2C JASPAR yes 187086120 936 71101475
chr3 187087057 187087069 MEF2A JASPAR yes 187086120 937 71101476
chr3 187087057 187087069 MEF2B JASPAR yes 187086120 937 71101477
chr3 187087057 187087069 MEF2D JASPAR yes 187086120 937 71101478
chr3 187087058 187087068 MEF2A JASPAR yes 187086120 938 71101479
chr3 187087059 187087063 YY1 TRANSFAC yes 187086120 939 71101480
chr3 187087101 187087111 RORA JASPAR yes 187086120 981 71101481
chr3 187087107 187087118 NFE2L2 JASPAR yes 187086120 987 71101482
chr3 187087121 187087141 TP63 JASPAR yes 187086120 1001 71101483
chr3 187087125 187087131 NFE2 TRANSFAC yes 187086120 1005 71101484
chr3 187087141 187087150 ZEB1 JASPAR yes 187086120 1021 71101485
chr3 187087159 187087164 ETS2 TRANSFAC yes 187086120 1039 71101486
SNPs associated with RTP4[ENSG00000136514.2], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr3 186765923 rs9818640 A G 320197 Esophagus 0.170443 7264784
chr3 187240245 rs4686888 T G 150381 Ovary 0.306422 7267464
Details of RTP4[ENSG00000136514.2]
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Genomic Location chr3:187086120-187089864[+]
TSS 187086120
Gene Name RTP4
Ensembl ID ENSG00000136514.2
ENTREZID 64108
Uniprot
Q96DX8
Protein Name
Receptor-transporting protein 4
Expression levels of RTP4[ENSG00000136514.2]
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