EnhancerDB
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Enhancers that regulate TPM1[ENSG00000140416.15]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 63230505 63240295 enh16215 63334831 94536
Prostate (PC-3) Kidney Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Lung Stomach Placenta Peripheral Blood (MM.1S) Pancreas (Panc1) Muscle (Myoblast) Pancreas Spleen Uterus Heart
chr15 63241765 63245915 enh96596 63334831 88916
Epithelial (MCF-7)
chr15 63248801 63264175 enh64862 63334831 70656
Pancreas Prostate (PC-3) Muscle (Myoblast) Heart
chr15 63264201 63273043 enh44131 63334831 61788
Muscle (Myoblast) Muscle (Myotube) Heart Lung (A549)
chr15 63276065 63281615 enh31445 63334831 53216
Astrocyte Uterus
chr15 63284805 63300886 enh16216 63334831 33945
Prostate (PC-3) Brain (SK-N-SH) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Lung (PC-9) Placenta Muscle (Myoblast) Pancreas Muscle (Myotube) Heart
chr15 63296233 63296451 vista20252 63334831 38380
VISTA
chr15 63301625 63317775 enh16217 63334831 17056
Liver Astrocyte Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr15 63320068 63324142 enh102521 63334831 10689
Bone (Osteoblast)
chr15 63339405 63348935 enh16218 63334831 4574
Bone Marrow (K562) Cervix (HeLa-S3) Astrocyte Placenta Lung (PC-9) Heart
chr15 63358554 63362875 enh44132 63334831 23723
Muscle (Myotube) Heart
chr15 63362965 63392035 enh16219 63334831 28134
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Astrocyte Bone (Osteoblast) Stomach Placenta Thyroid Uterus Pancreas (Panc1) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Heart
chr15 63368396 63368491 vista20253 63334831 33565
VISTA
chr15 63372629 63373133 vista20254 63334831 37798
VISTA
chr15 63382545 63386341 vista511 63334831 47714
VISTA
chr15 63386917 63387072 vista20255 63334831 52086
VISTA
chr15 63394890 63404375 enh31446 63334831 60059
Bone Marrow (K562) Liver (HepG2) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube)
chr15 63423965 63430339 enh31447 63334831 89134
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Uterus
chr15 63427902 63428515 vista20256 63334831 93071
VISTA
chr15 63432131 63432432 vista20257 63334831 97300
VISTA
Transcript facotrs that regulate TPM1[ENSG00000140416.15]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 63339450 63339464 SPIC JASPAR yes 63334831 4619 23946696
chr15 63339457 63339478 IRF1 JASPAR yes 63334831 4626 23946697
chr15 63339459 63339474 IRF9 JASPAR yes 63334831 4628 23946698
chr15 63339460 63339474 IRF7 JASPAR yes 63334831 4629 23946699
chr15 63339461 63339476 PRDM1 JASPAR yes 63334831 4630 23946700
chr15 63339461 63339476 STAT2 JASPAR yes 63334831 4630 23946701
chr15 63339462 63339474 IRF1 JASPAR yes 63334831 4631 23946702
chr15 63339472 63339490 SRF JASPAR yes 63334831 4641 23946703
chr15 63339473 63339478 ETS2 TRANSFAC yes 63334831 4642 23946704
chr15 63339482 63339503 ZNF263 JASPAR yes 63334831 4651 23946705
chr15 63339489 63339499 SP1 JASPAR yes 63334831 4658 23946706
chr15 63339489 63339510 ZNF263 JASPAR yes 63334831 4658 23946707
chr15 63339512 63339523 FOXC1 JASPAR yes 63334831 4681 23946708
chr15 63339513 63339524 FOXA1 JASPAR yes 63334831 4682 23946709
chr15 63339515 63339530 FOXP1 JASPAR yes 63334831 4684 23946710
chr15 63339516 63339532 POU4F2 JASPAR yes 63334831 4685 23946711
chr15 63339519 63339530 CDX2 JASPAR yes 63334831 4688 23946712
chr15 63339590 63339597 JUN TRANSFAC yes 63334831 4759 23946713
chr15 63339590 63339597 SP1 TRANSFAC yes 63334831 4759 23946714
chr15 63339604 63339608 YY1 TRANSFAC yes 63334831 4773 23946715
chr15 63339621 63339631 MZF1 JASPAR yes 63334831 4790 23946716
chr15 63339644 63339649 GATA1 TRANSFAC yes 63334831 4813 23946717
chr15 63339649 63339661 ZBTB7C JASPAR yes 63334831 4818 23946718
chr15 63339653 63339671 ESR1 JASPAR yes 63334831 4822 23946719
chr15 63339661 63339676 SCRT1 JASPAR yes 63334831 4830 23946720
chr15 63339662 63339672 FIGLA JASPAR yes 63334831 4831 23946721
chr15 63339663 63339672 SNAI2 JASPAR yes 63334831 4832 23946722
chr15 63339664 63339669 USF2 TRANSFAC yes 63334831 4833 23946723
chr15 63339690 63339705 RUNX2 JASPAR yes 63334831 4859 23946724
chr15 63339697 63339707 RELA JASPAR yes 63334831 4866 23946725
chr15 63339697 63339707 REL JASPAR yes 63334831 4866 23946726
chr15 63339703 63339708 ETS2 TRANSFAC yes 63334831 4872 23946727
chr15 63339712 63339730 SRF JASPAR yes 63334831 4881 23946728
chr15 63339740 63339758 NR3C1 JASPAR yes 63334831 4909 23946729
chr15 63339752 63339767 STAT1 JASPAR yes 63334831 4921 23946730
chr15 63339774 63339784 SREBF2 JASPAR yes 63334831 4943 23946731
chr15 63339775 63339788 SMAD2 JASPAR yes 63334831 4944 23946732
chr15 63339812 63339816 YY1 TRANSFAC yes 63334831 4981 23946733
chr15 63339820 63339839 RFX2 JASPAR yes 63334831 4989 23946734
chr15 63339822 63339833 FOXP2 JASPAR yes 63334831 4991 23946735
chr15 63339824 63339832 FOXO3 JASPAR yes 63334831 4993 23946736
chr15 63339824 63339840 RFX2 JASPAR yes 63334831 4993 23946737
chr15 63339825 63339840 STAT1 JASPAR yes 63334831 4994 23946738
chr15 63339827 63339838 STAT1 JASPAR yes 63334831 4996 23946739
chr15 63339827 63339838 STAT3 JASPAR yes 63334831 4996 23946740
chr15 63339830 63339840 NFATC3 JASPAR yes 63334831 4999 23946741
SNPs associated with TPM1[ENSG00000140416.15], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 63192448 rs4274387 G C 142383 Esophagus 0.0625693 4014340
chr15 63378253 rs8027272 G A 14139 Heart 0.158358 4016920
chr15 62749076 rs13379575 C T 585755 Breast 0.0416341 4010814
chr15 63099535 rs4774453 G A 235296 Spleen 0.307907 4013290
chr15 64158650 rs1017531 G A 794536 Uterus 0.276347 4022292
chr15 63360564 rs2729827 G A 0 Thyroid 0.000526993 4016663
chr15 64168708 rs77682796 G A,C 804594 Lung 0.0907738 4022442
chr15 63302700 rs57505847 C T 32131 Stomach 0.196354 4016014
Details of TPM1[ENSG00000140416.15]
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Genomic Location chr15:63334831-63364114[+]
TSS 63334831
Gene Name TPM1
Ensembl ID ENSG00000140416.15
ENTREZID 7168
Uniprot
B7Z596
Q6ZN40
F5H7S3
H0YK48
H7BYY1
B7Z722
D9YZV7
A0A024R5W6
D9YZV5
D9YZV4
O15513
P09493
A0A0K0K1I0
Protein Name
Epididymis secretory protein Li 265
TPMsk1
Tropomyosin 1
Tropomyosin alpha-1 chain
Expression levels of TPM1[ENSG00000140416.15]
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