EnhancerDB
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Enhancers that regulate BEST4[ENSG00000142959.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 45157645 45162155 enh311 45253377 91222
Blood (Karpas-422)
chr1 45167170 45167180 vista1453 45253377 86197
VISTA
chr1 45170697 45189455 enh312 45253377 63922
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Muscle (A673)
chr1 45192729 45193123 vista1454 45253377 60254
VISTA
chr1 45192844 45199975 enh313 45253377 53402
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr1 45195062 45195154 vista1455 45253377 58223
VISTA
chr1 45206985 45211135 enh74199 45253377 42242
Muscle (A673)
chr1 45244545 45248695 enh314 45253377 4682
Blood (Karpas-422)
chr1 45263465 45269995 enh315 45253377 10088
Blood (Karpas-422)
chr1 45283789 45284126 vista1456 45253377 30412
VISTA
chr1 45286834 45287205 vista1457 45253377 33457
VISTA
chr1 45298718 45299070 vista1458 45253377 45341
VISTA
chr1 45299510 45303912 enh89480 45253377 46133
Spleen Prostate (RWPE1)
chr1 45323747 45323764 vista1459 45253377 70370
VISTA
chr1 45324125 45328533 enh316 45253377 70748
Neural Stem Cells (H9) Blood (Karpas-422)
chr1 45348565 45352795 enh74200 45253377 95188
Muscle (A673) Spleen
Transcript facotrs that regulate BEST4[ENSG00000142959.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 45248371 45248381 NFATC3 JASPAR yes 45253377 4996 28579807
chr1 45248392 45248396 YY1 TRANSFAC yes 45253377 4981 28579808
chr1 45248431 45248445 MTF1 JASPAR yes 45253377 4932 28579809
chr1 45248437 45248456 CTCF JASPAR yes 45253377 4921 28579810
chr1 45248450 45248471 ZNF263 JASPAR yes 45253377 4906 28579811
chr1 45248451 45248472 ZNF263 JASPAR yes 45253377 4905 28579812
chr1 45248454 45248475 ZNF263 JASPAR yes 45253377 4902 28579813
chr1 45248460 45248464 NFE TRANSFAC yes 45253377 4913 28579814
chr1 45248460 45248473 SMAD2 JASPAR yes 45253377 4904 28579815
chr1 45248482 45248486 YY1 TRANSFAC yes 45253377 4891 28579816
chr1 45248486 45248491 GATA2 JASPAR yes 45253377 4886 28579817
chr1 45248501 45248515 IRF7 JASPAR yes 45253377 4862 28579818
chr1 45248510 45248521 ESRRB JASPAR yes 45253377 4856 28579819
chr1 45248523 45248528 H4TF1 TRANSFAC yes 45253377 4849 28579820
chr1 45248583 45248599 SOX4 JASPAR yes 45253377 4778 28579821
chr1 45248584 45248599 SOX21 JASPAR yes 45253377 4778 28579822
chr1 45248591 45248595 H1TF2 TRANSFAC yes 45253377 4782 28579823
chr1 45248591 45248595 NFE TRANSFAC yes 45253377 4782 28579824
chr1 45248591 45248595 SRF TRANSFAC yes 45253377 4782 28579825
chr1 45248604 45248617 SMAD2 JASPAR yes 45253377 4760 28579826
chr1 45248615 45248623 FOXO3 JASPAR yes 45253377 4754 28579827
chr1 45248616 45248627 STAT3 JASPAR yes 45253377 4750 28579828
chr1 45248617 45248632 HSF1 JASPAR yes 45253377 4745 28579829
chr1 45248618 45248631 HSF2 JASPAR yes 45253377 4746 28579830
chr1 45248625 45248640 STAT2 JASPAR yes 45253377 4737 28579831
chr1 45248628 45248643 FOXP1 JASPAR yes 45253377 4734 28579832
chr1 45248629 45248644 FOXP1 JASPAR yes 45253377 4733 28579833
chr1 45248662 45248665 MYB TRANSFAC yes 45253377 4712 28579834
chr1 45248687 45248695 NR4A2 JASPAR yes 45253377 4682 28579835
SNPs associated with BEST4[ENSG00000142959.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 45277456 rs147594413 TG T 24079 Esophagus 0.152625 281459
chr1 45019288 rs6700103 G T 229969 Esophagus 0.147072 279692
chr1 45277144 rs59803789 C T 23767 Heart 0.0687365 281454
chr1 44955903 rs147086684 G A 293354 Spleen 0.173054 279037
chr1 45724914 rs77401717 AGACTTTG A 471537 Uterus 0.383006 282819
chr1 45187285 rs11211026 G A 61972 Thyroid 1.36706e-08 280798
chr1 44940748 rs112605382 G GA 308509 Liver 0.429209 278909
Details of BEST4[ENSG00000142959.4]
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Genomic Location chr1:45249257-45253377[-]
TSS 45253377
Gene Name BEST4
Ensembl ID ENSG00000142959.4
ENTREZID 266675
Uniprot
Q8NFU0
Protein Name
Bestrophin-4
Expression levels of BEST4[ENSG00000142959.4]
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