EnhancerDB
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Enhancers that regulate SYT2[ENSG00000143858.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 202581625 202600615 enh61949 202679545 78930
Bone Marrow (K562) Brain (SK-N-SH) Esophagus Stomach Muscle (A673) Peripheral Blood (MM.1S) Pancreas Spleen Uterus Blood (T-cell) Heart
chr1 202605845 202611008 enh43113 202679545 68537
Muscle (Myotube) Large Intestine
chr1 202638625 202644235 enh95959 202679545 35310
Stomach Epithelial (MCF-7)
chr1 202647768 202652126 enh67241 202679545 27419
Neural Stem Cells (H9) Embryonic Stem Cell Line (H1-hESC)
chr1 202669257 202673467 enh115382 202679545 6078
Brain (SK-N-SH)
chr1 202737599 202737762 vista4609 202679545 58054
VISTA
chr1 202756065 202776635 enh27427 202679545 76520
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Stomach Muscle (A673) Peripheral Blood (MM.1S) Uterus Lung (PC-9) Muscle (Myoblast) Neural Stem Cells (H9) Epithelial (MCF-7)
chr1 202765097 202765528 vista4610 202679545 85552
VISTA
Transcript facotrs that regulate SYT2[ENSG00000143858.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with SYT2[ENSG00000143858.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 202204213 rs16849773 G A 355511 Esophagus 0.264072 861230
chr1 201736199 rs61821730 G A 823525 Heart 0.23322 857602
chr1 203152320 rs946260 G A 472775 Heart 0.317368 865526
chr1 203121296 rs16851008 G A 441751 Pancreas 0.391967 865433
chr1 202261791 rs67866539 ACT A 297933 Spleen 0.274137 861509
chr1 202014642 rs186952590 G A 545082 Uterus 0.39866 859281
chr1 202201572 rs76945633 T C 358152 Thyroid 0.0645812 861200
chr1 203536657 rs139343579 C T 857112 Lung 0.144912 869450
chr1 202815578 rs7519551 A G 136033 Stomach 0.367913 863960
chr1 203283620 rs140571411 C T 604075 Adrenal 0.190846 866730
Details of SYT2[ENSG00000143858.7]
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Genomic Location chr1:202559724-202679545[-]
TSS 202679545
Gene Name SYT2
Ensembl ID ENSG00000143858.7
ENTREZID 127833
Uniprot
Q8N9I0
A0A024R9B3
Protein Name
isoform CRA_a
SYT2 protein
Synaptotagmin II
Synaptotagmin-2
Expression levels of SYT2[ENSG00000143858.7]
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