EnhancerDB
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Enhancers that regulate LCN2[ENSG00000148346.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr9 130801965 130822635 enh26035 130911350 88715
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr9 130817970 130818290 vista63514 130911350 93060
VISTA
chr9 130834459 130834744 vista63515 130911350 76606
VISTA
chr9 130834970 130835273 vista63516 130911350 76077
VISTA
chr9 130837305 130853095 enh26036 130911350 58255
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Kidney Stomach Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr9 130844598 130844860 vista63517 130911350 66490
VISTA
chr9 130853145 130859695 enh26037 130911350 51655
Bone Marrow (K562) Brain (SK-N-MC) Adrenal Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr9 130875469 130882795 enh26038 130911350 28555
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Liver Blood (GM12878) Placenta Pancreas Spleen Epithelial (MCF-7)
chr9 130885365 130889515 enh10998 130911350 21835
Blood (Karpas-422)
chr9 130895845 130902535 enh26039 130911350 8815
Prostate (PC-3) Prostate (RWPE1) Astrocyte Placenta Lung (PC-9)
chr9 130898933 130899188 vista63518 130911350 12162
VISTA
chr9 130907941 130908020 vista63519 130911350 3330
VISTA
chr9 130934425 130938575 enh26040 130911350 23075
Placenta
chr9 130972105 130980495 enh42309 130911350 60755
Prostate (PC-3) Brain (SK-N-MC) Large Intestine Astrocyte Muscle (A673) Lung (PC-9) Pancreas Uterus Heart
chr9 130992546 130992666 vista63520 130911350 81196
VISTA
chr9 131002125 131008235 enh26041 130911350 90775
Astrocyte Placenta Uterus Brain (SK-N-SH)
chr9 131007254 131007504 vista63521 130911350 95904
VISTA
Transcript facotrs that regulate LCN2[ENSG00000148346.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr9 130907876 130908372 TCF7L2 UCSC Txn Factor no Conserved 130911350 2978 108552091
chr9 130907948 130907959 EBF1 JASPAR yes 130911350 3391 95425378
chr9 130907955 130907973 ESR1 JASPAR yes 130911350 3377 95425379
chr9 130907957 130907961 LFA1 TRANSFAC yes 130911350 3389 95425380
chr9 130907978 130907991 ZBTB18 JASPAR yes 130911350 3359 95425381
chr9 130907980 130907990 FIGLA JASPAR yes 130911350 3360 95425382
chr9 130907980 130907990 ID4 JASPAR yes 130911350 3360 95425383
chr9 130907980 130907990 TCF3 JASPAR yes 130911350 3360 95425384
chr9 130907980 130907990 TCF4 JASPAR yes 130911350 3360 95425385
chr9 130907982 130907991 ZEB1 JASPAR yes 130911350 3359 95425386
chr9 130907983 130907991 TBX5 JASPAR yes 130911350 3359 95425387
SNPs associated with LCN2[ENSG00000148346.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr9 130973058 rs2502728 T C 57324 Esophagus 0.354673 11315261
chr9 130908044 rs878400 G A 3306 Esophagus 1.59381e-09 11315072
chr9 130941741 rs11788797 C A,G 26007 Heart 0.275015 11315195
chr9 130661775 rs531868261 T C 249575 Heart 0.320688 11312654
chr9 130913014 rs73607625 C T 0 Pancreas 0.174678 11315087
chr9 131120381 rs117199693 G A 204647 Breast 0.110287 11315766
chr9 129951587 rs55733752 G A 959763 Spleen 0.364501 11308980
chr9 130029434 rs17377931 A T 881916 Adrenal 0.07657 11309335
Details of LCN2[ENSG00000148346.7]
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Genomic Location chr9:130911350-130915734[+]
TSS 130911350
Gene Name LCN2
Ensembl ID ENSG00000148346.7
ENTREZID 3934
Uniprot
P80188
Protein Name
Neutrophil gelatinase-associated lipocalin
Expression levels of LCN2[ENSG00000148346.7]
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