EnhancerDB
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Enhancers that regulate HMGA2[ENSG00000149948.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 66108951 66125042 enh29657 66217911 92869
Astrocyte Colon (HCT116) Prostate (RWPE1)
chr12 66132310 66137300 enh116159 66217911 80611
Pancreas (Panc1)
chr12 66135126 66135637 vista13840 66217911 82274
VISTA
chr12 66136008 66136292 vista13841 66217911 81619
VISTA
chr12 66146751 66161849 enh29658 66217911 56062
Skin (Keratinocyte) Prostate (PC-3) Prostate (RWPE1) Astrocyte Blood (GM12878) Colon (HCT116) Lung (PC-9) Muscle (Myotube) Neural Stem Cells (H9)
chr12 66159144 66159329 vista13842 66217911 58582
VISTA
chr12 66168947 66177881 enh58441 66217911 40030
Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Colon (HCT116) Lung (PC-9)
chr12 66179865 66184015 enh68161 66217911 33896
Neural Stem Cells (H9)
chr12 66190594 66199466 enh43758 66217911 18445
Muscle (Myotube) Neural Stem Cells (H9) Brain (SK-N-MC)
chr12 66205865 66210015 enh75064 66217911 7896
Muscle (A673)
chr12 66216365 66216749 vista13843 66217911 1162
VISTA
chr12 66227725 66231875 enh80236 66217911 9814
Prostate (PC-3)
chr12 66237933 66238219 vista13844 66217911 20022
VISTA
chr12 66239258 66256635 enh75065 66217911 21347
Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Muscle (A673) Colon (HCT116)
chr12 66242690 66243107 vista13845 66217911 24779
VISTA
chr12 66263065 66274702 enh68162 66217911 45154
Prostate (PC-3) Liver (HepG2) Stomach Colon (HCT116) Uterus Lung (PC-9) Neural Stem Cells (H9) Epithelial (MCF-7)
chr12 66278327 66298619 enh29659 66217911 60416
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Breast Uterus Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
chr12 66285844 66286273 vista13846 66217911 67933
VISTA
chr12 66286698 66286979 vista13847 66217911 68787
VISTA
chr12 66289506 66290040 vista13848 66217911 71595
VISTA
chr12 66292016 66292293 vista13849 66217911 74105
VISTA
chr12 66299189 66308255 enh75066 66217911 81278
Muscle (A673) Colon (HCT116) Brain (SK-N-MC)
chr12 66309445 66316394 enh86118 66217911 91534
Colon (HCT116) Peripheral Blood (MM.1S)
chr12 66311039 66311339 vista13850 66217911 93128
VISTA
chr12 66314249 66314458 vista13851 66217911 96338
VISTA
chr12 66316992 66317322 vista13852 66217911 99081
VISTA
chr12 66317865 66344925 enh43759 66217911 99954
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Prostate (RWPE1) Ovary Esophagus Lung (A549) Muscle (A673) Colon (HCT116) Thyroid Pancreas (Panc1) Muscle (Myotube) Uterus Stomach
Transcript facotrs that regulate HMGA2[ENSG00000149948.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 66216355 66216951 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 66217911 960 108042565
chr12 66216365 66216380 FOXP1 JASPAR yes 66217911 1531 82424949
chr12 66216366 66216381 FOXP1 JASPAR yes 66217911 1530 82424950
chr12 66216385 66216390 GATA2 JASPAR yes 66217911 1521 82424951
chr12 66216388 66216392 TEAD2 TRANSFAC yes 66217911 1519 82424952
chr12 66216389 66216399 POU6F2 JASPAR yes 66217911 1512 82424953
chr12 66216422 66216986 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 925 108042566
chr12 66216467 66217103 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 808 108042567
chr12 66216467 66221897 POLR2A UCSC Txn Factor no Conserved 66217911 1444 108042568
chr12 66216481 66217001 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 910 108042569
chr12 66216482 66216493 FOXA1 JASPAR yes 66217911 1418 82424954
chr12 66216482 66216497 FOXA1 JASPAR yes 66217911 1414 82424955
chr12 66216483 66216495 FOXC2 JASPAR yes 66217911 1416 82424956
chr12 66216488 66216508 RREB1 JASPAR yes 66217911 1403 82424957
chr12 66216493 66216513 RREB1 JASPAR yes 66217911 1398 82424958
chr12 66216505 66217049 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 862 108042570
chr12 66216510 66216514 YY1 TRANSFAC yes 66217911 1397 82424959
chr12 66216511 66216887 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66217911 1024 108042571
chr12 66216512 66216532 TBX19 JASPAR yes 66217911 1379 82424960
chr12 66216522 66217012 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 899 108042572
chr12 66216533 66217057 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66217911 854 108042573
chr12 66216536 66216551 RUNX2 JASPAR yes 66217911 1360 82424961
chr12 66216542 66216832 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 1079 108042574
chr12 66216543 66216554 FOXA1 JASPAR yes 66217911 1357 82424962
chr12 66216543 66216558 FOXA1 JASPAR yes 66217911 1353 82424963
chr12 66216551 66216875 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 1036 108042575
chr12 66216559 66217155 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 66217911 756 108042576
chr12 66216570 66217106 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66217911 805 108042577
chr12 66216577 66216582 NFY TRANSFAC yes 66217911 1329 82424964
chr12 66216579 66216585 NFIC JASPAR yes 66217911 1326 82424965
chr12 66216580 66216956 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 955 108042578
chr12 66216583 66216823 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 1088 108042579
chr12 66216586 66216926 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 985 108042580
chr12 66216587 66216595 FEV JASPAR yes 66217911 1316 82424966
chr12 66216591 66216947 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66217911 964 108042581
chr12 66216592 66216609 ESR1 JASPAR yes 66217911 1302 82424967
chr12 66216595 66216610 SOX21 JASPAR yes 66217911 1301 82424968
chr12 66216595 66216611 SOX4 JASPAR yes 66217911 1300 82424969
chr12 66216601 66217056 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 855 108042582
chr12 66216602 66216962 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 949 108042583
chr12 66216606 66216882 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 1029 108042584
chr12 66216611 66216811 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 1100 108042585
chr12 66216612 66216892 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66217911 1019 108042586
chr12 66216617 66216986 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66217911 925 108042587
chr12 66216622 66216938 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66217911 973 108042588
chr12 66216622 66216978 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 933 108042589
chr12 66216623 66216638 LEF1 JASPAR yes 66217911 1273 82424970
chr12 66216624 66216638 TCF7L2 JASPAR yes 66217911 1273 82424971
chr12 66216624 66216960 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 951 108042590
chr12 66216626 66216633 TCF4 TRANSFAC yes 66217911 1278 82424972
chr12 66216627 66216633 LEF1 TRANSFAC yes 66217911 1278 82424973
chr12 66216627 66216633 TCF4 TRANSFAC yes 66217911 1278 82424974
chr12 66216627 66217063 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66217911 848 108042591
chr12 66216630 66216946 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 965 108042592
chr12 66216636 66216966 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 945 108042593
chr12 66216653 66216983 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 928 108042594
chr12 66216660 66216916 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66217911 995 108042595
chr12 66216666 66216942 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 969 108042596
chr12 66216672 66216868 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 1043 108042597
chr12 66216676 66216966 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 945 108042598
chr12 66216678 66217054 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 857 108042599
chr12 66216686 66216946 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 965 108042600
chr12 66216688 66216694 SP1 TRANSFAC yes 66217911 1217 82424975
chr12 66216688 66216698 SP1 JASPAR yes 66217911 1213 82424976
chr12 66216689 66216700 E2F6 JASPAR yes 66217911 1211 82424977
chr12 66216692 66216916 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 995 108042601
chr12 66216692 66216936 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 975 108042602
chr12 66216692 66217056 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 855 108042603
chr12 66216696 66216702 MZF1 JASPAR yes 66217911 1209 82424978
chr12 66216696 66217096 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 815 108042604
chr12 66216702 66216712 NHLH1 JASPAR yes 66217911 1199 82424979
chr12 66216717 66216929 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 982 108042605
chr12 66216722 66217066 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 845 108042606
chr12 66216725 66217075 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66217911 836 108042607
chr12 66216729 66216999 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 66217911 912 108042608
chr12 66216732 66216982 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 66217911 929 108042609
chr12 66216733 66217013 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 66217911 898 108042610
chr12 66216740 66216990 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 921 108042611
chr12 66216742 66216868 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 66217911 1043 108042612
chr12 66216744 66217080 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 66217911 831 108042613
SNPs associated with HMGA2[ENSG00000149948.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr12 65278410 rs12422770 G A 939501 Pancreas 0.0994107 2691297
chr12 66427343 rs149323441 A G 67268 Ovary 0.0865101 2697394
Details of HMGA2[ENSG00000149948.9]
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Genomic Location chr12:66217911-66360075[+]
TSS 66217911
Gene Name HMGA2
Ensembl ID ENSG00000149948.9
ENTREZID 8091
Uniprot
P52926
Q1M183
F5H6H0
F5H2A4
Protein Name
HMGA2e
High mobility group protein HMGI-C
Expression levels of HMGA2[ENSG00000149948.9]
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