EnhancerDB
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Enhancers that regulate GDPD1[ENSG00000153982.6]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 57200500 57200626 vista25314 57297828 97202
VISTA
chr17 57203741 57203833 vista25315 57297828 93995
VISTA
chr17 57213765 57221639 enh17254 57297828 76189
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Esophagus Placenta
chr17 57224505 57228717 enh81238 57297828 69111
Prostate (PC-3) Cervix (HeLa-S3) Lung (PC-9) Colon (HCT116)
chr17 57231102 57231481 vista25316 57297828 66347
VISTA
chr17 57231530 57231848 vista25317 57297828 65980
VISTA
chr17 57241235 57245605 enh4501 57297828 52223
Skin (Keratinocyte) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Muscle (A673) Colon (HCT116) Blood (Karpas-422) Spleen Epithelial (MCF-7)
chr17 57263185 57267335 enh4502 57297828 30493
Blood (Karpas-422)
chr17 57276702 57276986 vista25318 57297828 20842
VISTA
chr17 57298532 57298798 vista25319 57297828 704
VISTA
chr17 57330185 57334335 enh108672 57297828 32357
Lung (PC-9)
chr17 57354045 57359435 enh101509 57297828 56217
Thyroid Peripheral Blood (MM.1S)
chr17 57362545 57379195 enh17255 57297828 64717
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Stomach Placenta Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Epithelial (MCF-7)
chr17 57383945 57388095 enh17256 57297828 86117
Placenta
Transcript facotrs that regulate GDPD1[ENSG00000153982.6]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 57297411 57298550 POLR2A UCSC Txn Factor no Conserved 57297828 417 108275753
chr17 57298074 57298564 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 57297828 246 108275754
chr17 57298102 57298826 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57297828 274 108275755
chr17 57298231 57298735 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57297828 403 108275756
chr17 57298237 57298731 ZNF143 GTRD no Epithelial (MCF-7) 57297828 409 108275757
chr17 57298264 57298652 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57297828 436 108275758
chr17 57298302 57298692 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57297828 474 108275759
chr17 57298347 57298691 ZNF143 GTRD no Epithelial (MCF-7) 57297828 519 108275760
chr17 57298368 57298699 ZNF143 GTRD no Epithelial (MCF-7) 57297828 540 108275761
chr17 57298373 57298593 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 57297828 545 108275762
chr17 57298392 57298582 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 57297828 564 108275763
chr17 57298395 57298705 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 57297828 567 108275764
chr17 57298485 57299141 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 57297828 657 108275765
chr17 57298499 57298743 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 57297828 671 108275766
chr17 57298535 57298541 ZNF354C JASPAR yes 57297828 707 21263795
chr17 57298541 57298546 ETS2 TRANSFAC yes 57297828 713 21263796
chr17 57298559 57298566 CEBPA TRANSFAC yes 57297828 731 21263797
chr17 57298568 57298573 TFAP2A TRANSFAC yes 57297828 740 21263798
chr17 57298568 57298574 MZF1 JASPAR yes 57297828 740 21263799
chr17 57298570 57298583 POU2F2 JASPAR yes 57297828 742 21263800
chr17 57298571 57298583 POU3F1 JASPAR yes 57297828 743 21263801
chr17 57298571 57298583 POU3F2 JASPAR yes 57297828 743 21263802
chr17 57298572 57298584 POU2F1 JASPAR yes 57297828 744 21263803
chr17 57298573 57298580 POU2F1 TRANSFAC yes 57297828 745 21263804
chr17 57298573 57298580 POU2F2C TRANSFAC yes 57297828 745 21263805
chr17 57298573 57298580 POU2F2 TRANSFAC yes 57297828 745 21263806
chr17 57298573 57298582 POU3F4 JASPAR yes 57297828 745 21263807
chr17 57298573 57298582 POU5F1B JASPAR yes 57297828 745 21263808
chr17 57298597 57298600 MYB TRANSFAC yes 57297828 769 21263809
chr17 57298600 57298621 REST JASPAR yes 57297828 772 21263810
chr17 57298601 57298620 REST JASPAR yes 57297828 773 21263811
chr17 57298611 57298625 GLIS2 JASPAR yes 57297828 783 21263812
chr17 57298619 57298624 SP1 TRANSFAC yes 57297828 791 21263813
chr17 57298619 57298637 ESR1 JASPAR yes 57297828 791 21263814
chr17 57298629 57298639 ZNF740 JASPAR yes 57297828 801 21263815
chr17 57298658 57298679 IRF1 JASPAR yes 57297828 830 21263816
chr17 57298662 57298676 STAT1 JASPAR yes 57297828 834 21263817
chr17 57298662 57298677 PRDM1 JASPAR yes 57297828 834 21263818
chr17 57298662 57298677 STAT2 JASPAR yes 57297828 834 21263819
chr17 57298663 57298674 E2F6 JASPAR yes 57297828 835 21263820
chr17 57298678 57298690 TFAP2A JASPAR yes 57297828 850 21263821
chr17 57298678 57298690 TFAP2B JASPAR yes 57297828 850 21263822
chr17 57298678 57298690 TFAP2C JASPAR yes 57297828 850 21263823
chr17 57298694 57298698 YY1 TRANSFAC yes 57297828 866 21263824
chr17 57298700 57298711 ESRRA JASPAR yes 57297828 872 21263825
chr17 57298700 57298711 ESRRB JASPAR yes 57297828 872 21263826
chr17 57298700 57298713 NR2F1 JASPAR yes 57297828 872 21263827
chr17 57298702 57298710 NR4A2 JASPAR yes 57297828 874 21263828
chr17 57298704 57298708 ESR1 TRANSFAC yes 57297828 876 21263829
chr17 57298708 57298716 BARX1 JASPAR yes 57297828 880 21263830
chr17 57298751 57298766 TFAP2A JASPAR yes 57297828 923 21263831
chr17 57298751 57298766 TFAP2C JASPAR yes 57297828 923 21263832
chr17 57298753 57298757 H4TF2 TRANSFAC yes 57297828 925 21263833
chr17 57298767 57298781 NR2F1 JASPAR yes 57297828 939 21263834
chr17 57298769 57298785 SOX8 JASPAR yes 57297828 941 21263835
chr17 57298774 57298795 IRF1 JASPAR yes 57297828 946 21263836
chr17 57298776 57298797 IRF1 JASPAR yes 57297828 948 21263837
chr17 57298777 57298792 FOXP1 JASPAR yes 57297828 949 21263838
chr17 57298777 57298798 IRF1 JASPAR yes 57297828 949 21263839
chr17 57298779 57298794 FOXP1 JASPAR yes 57297828 951 21263840
chr17 57298780 57298795 FOXP1 JASPAR yes 57297828 952 21263841
chr17 57298781 57298796 FOXP1 JASPAR yes 57297828 953 21263842
chr17 57298782 57298797 FOXP1 JASPAR yes 57297828 954 21263843
chr17 57298783 57298798 FOXP1 JASPAR yes 57297828 955 21263844
SNPs associated with GDPD1[ENSG00000153982.6], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 56465130 rs151140091 G A 832698 Esophagus 0.0273269 4956291
chr17 57577857 rs187256260 C T 224529 Esophagus 0.292876 4960561
chr17 57501901 rs2012146 T C 148573 Heart 0.177887 4959894
chr17 56708963 rs562922856 CCAACTACTATTAACAT C 588865 Heart 0.29527 4956900
chr17 56409956 rs116985917 T C 887872 Ovary 0.268376 4955936
chr17 56404703 rs62084583 A G 893125 Uterus 0.224706 4955879
chr17 57264660 rs9894722 C T 33168 Thyroid 1.70793e-05 4958275
chr17 57571523 rs377490656 G GACA 218195 Stomach 0.208256 4960502
Details of GDPD1[ENSG00000153982.6]
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Genomic Location chr17:57297828-57353328[+]
TSS 57297828
Gene Name GDPD1
Ensembl ID ENSG00000153982.6
ENTREZID 284161
Uniprot
Q8N9F7
Protein Name
Glycerophosphodiester phosphodiesterase domain-containing protein 1
Expression levels of GDPD1[ENSG00000153982.6]
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