EnhancerDB
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Enhancers that regulate CCNF[ENSG00000162063.8]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 2379625 2386175 enh96652 2479395 93220
Thyroid Epithelial (MCF-7)
chr16 2407421 2407607 vista21571 2479395 71788
VISTA
chr16 2412862 2425435 enh31668 2479395 53960
Brain (SK-N-SH) Large Intestine Astrocyte Blood (GM12878) Muscle (Myoblast) Spleen
chr16 2433545 2441303 enh69014 2479395 38092
Prostate (PC-3) Pancreas Pancreas (Panc1) Neural Stem Cells (H9) Stomach
chr16 2464585 2468735 enh31669 2479395 10660
Astrocyte
chr16 2478608 2478672 vista21572 2479395 723
VISTA
chr16 2501459 2501492 vista21573 2479395 22064
VISTA
chr16 2518153 2531971 enh91090 2479395 38758
Bone Marrow (K562) Bone (Osteoblast)
chr16 2518541 2518691 vista21574 2479395 39146
VISTA
chr16 2518760 2519270 vista21575 2479395 39365
VISTA
chr16 2537919 2538152 vista21576 2479395 58524
VISTA
chr16 2545465 2549615 enh109695 2479395 66070
Stomach
chr16 2557760 2557909 vista21577 2479395 78365
VISTA
chr16 2560407 2564919 enh102538 2479395 81012
Bone (Osteoblast)
chr16 2561562 2561710 vista21578 2479395 82167
VISTA
chr16 2568865 2577035 enh16502 2479395 89470
Placenta Liver (HepG2) Large Intestine Stomach
Transcript facotrs that regulate CCNF[ENSG00000162063.8]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 2477676 2478654 ZNF143 GTRD no Epithelial (MCF-7) 2479395 741 108172382
chr16 2477893 2478716 ZNF274 GTRD no Bone Marrow (K562) 2479395 679 108172383
chr16 2478185 2480836 ZNF274 GTRD no Bone Marrow (K562) 2479395 1210 108172384
chr16 2478370 2480007 ZNF274 GTRD no Bone Marrow (K562) 2479395 612 108172385
chr16 2478382 2478818 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 577 108172386
chr16 2478406 2478782 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 613 108172387
chr16 2478432 2478884 CTCF UCSC Txn Factor no Conserved 2479395 511 108172388
chr16 2478434 2478834 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 561 108172389
chr16 2478443 2479449 MAX UCSC Txn Factor no Conserved 2479395 54 108172390
chr16 2478455 2478815 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 2479395 580 108172391
chr16 2478461 2479806 POLR2A UCSC Txn Factor no Conserved 2479395 411 108172392
chr16 2478501 2478771 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 2479395 624 108172393
chr16 2478502 2478792 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 2479395 603 108172394
chr16 2478505 2478721 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 2479395 674 108172395
chr16 2478505 2478795 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 600 108172396
chr16 2478506 2478736 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 2479395 659 108172397
chr16 2478509 2478779 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 616 108172398
chr16 2478517 2478797 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 598 108172399
chr16 2478532 2478702 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 693 108172400
chr16 2478534 2478707 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 2479395 688 108172401
chr16 2478545 2478721 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 674 108172402
chr16 2478556 2479132 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 2479395 263 108172403
chr16 2478570 2478707 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 688 108172404
chr16 2478583 2478675 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 720 108172405
chr16 2478605 2478838 ZNF274 GTRD no Bone Marrow (K562) 2479395 557 108172406
chr16 2478612 2478633 ZNF263 JASPAR yes 2479395 762 49327783
chr16 2478617 2478634 RARA JASPAR yes 2479395 761 49327784
chr16 2478617 2479243 PHF8 UCSC Txn Factor no Conserved 2479395 152 108172407
chr16 2478617 2479243 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 152 108172408
chr16 2478629 2478633 LFA1 TRANSFAC yes 2479395 762 49327785
chr16 2478632 2478645 ZBTB18 JASPAR yes 2479395 750 49327786
chr16 2478634 2478655 REST JASPAR yes 2479395 740 49327787
chr16 2478635 2478654 REST JASPAR yes 2479395 741 49327788
chr16 2478640 2479144 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 251 108172409
chr16 2478647 2479157 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 2479395 238 108172410
chr16 2478648 2478658 MZF1 JASPAR yes 2479395 737 49327789
chr16 2478651 2478656 TFAP2A TRANSFAC yes 2479395 739 49327790
chr16 2478651 2478657 MZF1 JASPAR yes 2479395 738 49327791
chr16 2478653 2478659 MAZ TRANSFAC yes 2479395 736 49327792
chr16 2478663 2478672 TFAP2A JASPAR yes 2479395 723 49327793
SNPs associated with CCNF[ENSG00000162063.8], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 2470720 rs11866534 G C 8675 Esophagus 0.0964892 4261536
chr16 3381758 rs148461429 T G 872903 Esophagus 0.118632 4268782
chr16 2471192 rs78985511 T C 8203 Esophagus 0.337247 4261540
chr16 2974200 rs149640223 G A,T 465345 Heart 0.0867548 4265368
chr16 1989985 rs2754178 G A 489410 Pancreas 0.369575 4259146
chr16 2886523 rs4439767 C G 377668 Breast 0.276941 4264181
chr16 2478253 rs4412969 T C 1142 Thyroid 4.16606e-06 4261620
chr16 2475021 rs11641123 T C 4374 Lung 0.13249 4261585
Details of CCNF[ENSG00000162063.8]
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Genomic Location chr16:2479395-2508855[+]
TSS 2479395
Gene Name CCNF
Ensembl ID ENSG00000162063.8
ENTREZID 899
Uniprot
P41002
Q59HD0
Protein Name
Cyclin-F
Expression levels of CCNF[ENSG00000162063.8]
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