EnhancerDB
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Enhancers that regulate KLHDC9[ENSG00000162755.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 160972513 160972848 vista3634 161068151 95303
VISTA
chr1 160974445 160990115 enh12323 161068151 78036
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Blood (T-cell) Esophagus Brain (SK-N-MC) Lung Blood (OCI-LY7) Stomach Placenta Thyroid Uterus Lung (PC-9) Pancreas Neural Stem Cells (H9) Thymus Heart
chr1 160982920 160983992 vista3635 161068151 84159
VISTA
chr1 160989381 160990254 vista3636 161068151 77897
VISTA
chr1 161000586 161005929 enh58162 161068151 62222
Skin (Keratinocyte) Prostate (PC-3) Colon (HCT116) Lung (PC-9) Breast
chr1 161002043 161002401 vista3637 161068151 65750
VISTA
chr1 161009785 161013935 enh684 161068151 54216
Blood (Karpas-422)
chr1 161037907 161038726 vista3638 161068151 29425
VISTA
chr1 161041588 161045852 enh85982 161068151 22299
Colon (HCT116)
chr1 161048517 161057286 enh12324 161068151 10865
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Lung (PC-9) Esophagus Astrocyte Stomach Placenta Muscle (Myoblast) Pancreas Epithelial (MCF-7)
chr1 161050902 161051096 vista3639 161068151 17055
VISTA
chr1 161052363 161052546 vista3640 161068151 15605
VISTA
chr1 161066354 161066604 vista3641 161068151 1547
VISTA
chr1 161082365 161086515 enh27156 161068151 14214
Astrocyte
chr1 161096305 161100455 enh107418 161068151 28154
Blood (T-cell)
chr1 161107669 161111835 enh61915 161068151 39518
Esophagus Stomach
chr1 161148545 161152695 enh103116 161068151 80394
Peripheral Blood (MM.1S)
chr1 161155098 161155533 vista3642 161068151 86947
VISTA
chr1 161155908 161155971 vista3643 161068151 87757
VISTA
Transcript facotrs that regulate KLHDC9[ENSG00000162755.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 161065863 161066453 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 161068151 1698 107841458
chr1 161066093 161066417 ZNF274 GTRD no Blood (GM12878) 161068151 1734 107841459
chr1 161066293 161066388 ZNF274 GTRD no Blood (GM12878) 161068151 1763 107841460
chr1 161066300 161066816 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 161068151 1335 107841461
chr1 161066387 161066394 SPIB JASPAR yes 161068151 1757 118386974
chr1 161066387 161066398 FLI1 JASPAR yes 161068151 1753 118386975
chr1 161066387 161066408 ZNF263 JASPAR yes 161068151 1743 118386976
chr1 161066388 161066409 ZNF263 JASPAR yes 161068151 1742 118386977
chr1 161066410 161066421 NFKB1 JASPAR yes 161068151 1730 118386978
chr1 161066411 161066421 REL JASPAR yes 161068151 1730 118386979
chr1 161066425 161066430 SP1 TRANSFAC yes 161068151 1721 118386980
chr1 161066427 161066432 TFAP2A TRANSFAC yes 161068151 1719 118386981
chr1 161066427 161066433 MZF1 JASPAR yes 161068151 1718 118386982
chr1 161066427 161066440 NFKB1 JASPAR yes 161068151 1711 118386983
chr1 161066427 161066440 NFKB2 JASPAR yes 161068151 1711 118386984
chr1 161066428 161066438 NFKB1 JASPAR yes 161068151 1713 118386985
chr1 161066428 161066438 REL JASPAR yes 161068151 1713 118386986
chr1 161066428 161066439 NFKB1 JASPAR yes 161068151 1712 118386987
chr1 161066429 161066439 NFKB1 JASPAR yes 161068151 1712 118386988
chr1 161066429 161066439 RELA JASPAR yes 161068151 1712 118386989
chr1 161066429 161066440 NFKB1 JASPAR yes 161068151 1711 118386990
chr1 161066430 161066445 STAT2 JASPAR yes 161068151 1706 118386991
chr1 161066438 161066442 YY1 TRANSFAC yes 161068151 1709 118386992
chr1 161066443 161066447 NFE TRANSFAC yes 161068151 1704 118386993
chr1 161066444 161066449 GATA2 JASPAR yes 161068151 1702 118386994
chr1 161066470 161066473 MYB TRANSFAC yes 161068151 1678 118386995
chr1 161066500 161066518 SRF JASPAR yes 161068151 1633 118386996
chr1 161066516 161066620 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 161068151 1531 107841462
chr1 161066517 161066532 NFYB JASPAR yes 161068151 1619 118386997
chr1 161066519 161066535 NFYA JASPAR yes 161068151 1616 118386998
chr1 161066520 161066538 NFYA JASPAR yes 161068151 1613 118386999
chr1 161066524 161066528 H1TF2 TRANSFAC yes 161068151 1623 118387000
chr1 161066524 161066528 NFE TRANSFAC yes 161068151 1623 118387001
chr1 161066524 161066528 SRF TRANSFAC yes 161068151 1623 118387002
chr1 161066543 161066554 CEBPA JASPAR yes 161068151 1597 118387003
chr1 161066543 161070664 ZNF274 GTRD no Blood (GM12878) 161068151 1608 107841463
chr1 161066546 161066555 SP1 TRANSFAC yes 161068151 1596 118387004
chr1 161066551 161066563 TFAP2A JASPAR yes 161068151 1588 118387005
chr1 161066551 161066563 TFAP2B JASPAR yes 161068151 1588 118387006
chr1 161066551 161066563 TFAP2C JASPAR yes 161068151 1588 118387007
chr1 161066551 161066566 TFAP2A JASPAR yes 161068151 1585 118387008
chr1 161066551 161066566 TFAP2C JASPAR yes 161068151 1585 118387009
chr1 161066551 161067412 ZNF274 GTRD no Blood (GM12878) 161068151 739 107841464
chr1 161066552 161066563 TFAP2A JASPAR yes 161068151 1588 118387010
chr1 161066552 161066563 TFAP2B JASPAR yes 161068151 1588 118387011
chr1 161066552 161066563 TFAP2C JASPAR yes 161068151 1588 118387012
chr1 161066571 161066580 PITX3 JASPAR yes 161068151 1571 118387013
chr1 161066571 161066581 GSC2 JASPAR yes 161068151 1570 118387014
chr1 161066571 161066581 GSC JASPAR yes 161068151 1570 118387015
chr1 161066572 161066580 OTX2 JASPAR yes 161068151 1571 118387016
chr1 161066575 161067643 ZNF274 GTRD no Bone Marrow (K562) 161068151 508 107841465
chr1 161066587 161066599 TGIF1 JASPAR yes 161068151 1552 118387017
chr1 161066595 161067380 ZNF274 GTRD no Blood (GM12878) 161068151 771 107841466
SNPs associated with KLHDC9[ENSG00000162755.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 161880482 rs12079579 G A 810346 Esophagus 0.157778 673999
chr1 161068119 rs77584890 C T 32 Esophagus 5.96068e-10 670226
chr1 161936121 rs9783069 T G 865985 Esophagus 0.154159 674514
chr1 161352397 rs144189721 C T 282261 Heart 0.334642 671377
chr1 161068119 rs77584890 C T 32 Spleen 0.00310858 670226
chr1 160616768 rs12076998 G A 451383 Ovary 0.262 666850
chr1 162061887 rs35899595 G A 991751 Thyroid 0.238422 675586
chr1 161407851 rs79472411 A G 337715 Stomach 0.213177 671934
chr1 160404288 rs11265397 T C 663863 Adrenal 0.243033 665000
Details of KLHDC9[ENSG00000162755.9]
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Genomic Location chr1:161068151-161070136[+]
TSS 161068151
Gene Name KLHDC9
Ensembl ID ENSG00000162755.9
ENTREZID 126823
Uniprot
Q8NEP7
Protein Name
Kelch domain-containing protein 9
Expression levels of KLHDC9[ENSG00000162755.9]
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