EnhancerDB
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Enhancers that regulate LARP6[ENSG00000166173.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr15 71031299 71046793 enh31479 71146498 99705
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr15 71047994 71053355 enh64875 71146498 93143
Liver (HepG2) Heart
chr15 71061124 71101935 enh16295 71146498 44563
Liver Astrocyte Colon (HCT116) Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr15 71078596 71078640 vista20586 71146498 67858
VISTA
chr15 71084406 71084742 vista20587 71146498 61756
VISTA
chr15 71102485 71110170 enh81023 71146498 36328
Prostate (PC-3) Epithelial (MCF-7)
chr15 71115426 71121412 enh16296 71146498 25086
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Thyroid Muscle (Myoblast) Pancreas Muscle (Myotube) Epithelial (MCF-7)
chr15 71124285 71128435 enh109677 71146498 18063
Stomach
chr15 71126164 71126470 vista20588 71146498 20028
VISTA
chr15 71129805 71133955 enh110853 71146498 12543
Cervix (HeLa-S3)
chr15 71144876 71145062 vista20589 71146498 1436
VISTA
chr15 71149072 71149436 vista20590 71146498 2574
VISTA
chr15 71153667 71164886 enh31480 71146498 7169
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
chr15 71155799 71156069 vista20591 71146498 9301
VISTA
chr15 71176892 71177111 vista20592 71146498 30394
VISTA
chr15 71233405 71237855 enh101442 71146498 86907
Thyroid
chr15 71245680 71249720 enh94938 71146498 99182
Muscle (Myoblast)
Transcript facotrs that regulate LARP6[ENSG00000166173.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr15 71144886 71144899 POU2F2 JASPAR yes 71146498 1599 70554402
chr15 71144886 71144900 POU1F1 JASPAR yes 71146498 1598 70554403
chr15 71144887 71144891 YY1 TRANSFAC yes 71146498 1607 70554404
chr15 71144887 71144899 POU3F1 JASPAR yes 71146498 1599 70554405
chr15 71144887 71144899 POU3F2 JASPAR yes 71146498 1599 70554406
chr15 71144887 71144900 POU3F3 JASPAR yes 71146498 1598 70554407
chr15 71144888 71144900 POU2F1 JASPAR yes 71146498 1598 70554408
chr15 71144889 71144898 POU5F1B JASPAR yes 71146498 1600 70554409
chr15 71144890 71144898 FOXL1 JASPAR yes 71146498 1600 70554410
chr15 71144896 71144911 SOX21 JASPAR yes 71146498 1587 70554411
chr15 71144937 71144949 PKNOX1 JASPAR yes 71146498 1549 70554412
chr15 71144937 71144949 PKNOX2 JASPAR yes 71146498 1549 70554413
chr15 71144937 71144949 TGIF1 JASPAR yes 71146498 1549 70554414
chr15 71144937 71144949 TGIF2 JASPAR yes 71146498 1549 70554415
chr15 71144943 71144947 NFE TRANSFAC yes 71146498 1551 70554416
chr15 71144947 71144958 FOSL2 JASPAR yes 71146498 1540 70554417
chr15 71144947 71144958 JUNB JASPAR yes 71146498 1540 70554418
chr15 71144948 71144959 FOSL1 JASPAR yes 71146498 1539 70554419
chr15 71144949 71144956 JUN TRANSFAC yes 71146498 1542 70554420
chr15 71144965 71144969 YY1 TRANSFAC yes 71146498 1529 70554421
chr15 71144971 71144985 MTF1 JASPAR yes 71146498 1513 70554422
chr15 71144983 71144993 NFIA JASPAR yes 71146498 1505 70554423
chr15 71144984 71144993 NFIX JASPAR yes 71146498 1505 70554424
chr15 71144985 71144991 NFIC JASPAR yes 71146498 1507 70554425
chr15 71144985 71144999 TLX1 JASPAR yes 71146498 1499 70554426
chr15 71144986 71145000 TLX1 JASPAR yes 71146498 1498 70554427
chr15 71144995 71145005 BARHL2 JASPAR yes 71146498 1493 70554428
chr15 71144996 71145009 DUXA JASPAR yes 71146498 1489 70554429
chr15 71144997 71145008 DUX4 JASPAR yes 71146498 1490 70554430
chr15 71145012 71145028 POU4F2 JASPAR yes 71146498 1470 70554431
chr15 71145012 71145028 POU4F3 JASPAR yes 71146498 1470 70554432
chr15 71145015 71145019 YY1 TRANSFAC yes 71146498 1479 70554433
chr15 71145018 71145022 TEAD2 TRANSFAC yes 71146498 1476 70554434
chr15 71145018 71145023 TBP TRANSFAC yes 71146498 1475 70554435
chr15 71145032 71145036 NFE TRANSFAC yes 71146498 1462 70554436
chr15 71145032 71145037 GATA1 TRANSFAC yes 71146498 1461 70554437
chr15 71145032 71145038 GATA3 JASPAR yes 71146498 1460 70554438
chr15 71145039 71145045 SOX10 JASPAR yes 71146498 1453 70554439
chr15 71145055 71145059 H4TF2 TRANSFAC yes 71146498 1439 70554440
chr15 71148939 71149443 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2441 108153845
chr15 71149034 71149498 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2536 108153846
chr15 71149076 71149090 PLAG1 JASPAR yes 71146498 2578 70554441
chr15 71149077 71149481 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2579 108153847
chr15 71149082 71149093 E2F6 JASPAR yes 71146498 2584 70554442
chr15 71149083 71149539 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2585 108153848
chr15 71149085 71149441 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71146498 2587 108153849
chr15 71149086 71149091 ETS2 TRANSFAC yes 71146498 2588 70554443
chr15 71149100 71149584 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 71146498 2602 108153850
chr15 71149101 71149471 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2603 108153851
chr15 71149101 71149497 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2603 108153852
chr15 71149106 71149112 LEF1 TRANSFAC yes 71146498 2608 70554444
chr15 71149106 71149112 SOX10 JASPAR yes 71146498 2608 70554445
chr15 71149127 71149475 CEBPB UCSC Txn Factor no Conserved 71146498 2629 108153853
chr15 71149127 71149475 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2629 108153854
chr15 71149130 71149514 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2632 108153855
chr15 71149144 71149311 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2646 108153856
chr15 71149150 71149160 MYF6 JASPAR yes 71146498 2652 70554446
chr15 71149156 71149416 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2658 108153857
chr15 71149163 71149493 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2665 108153858
chr15 71149166 71149172 LEF1 TRANSFAC yes 71146498 2668 70554447
chr15 71149166 71149172 TCF4 TRANSFAC yes 71146498 2668 70554448
chr15 71149168 71149488 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2670 108153859
chr15 71149178 71149189 GCM1 JASPAR yes 71146498 2680 70554449
chr15 71149178 71149193 RUNX2 JASPAR yes 71146498 2680 70554450
chr15 71149179 71149189 GCM2 JASPAR yes 71146498 2681 70554451
chr15 71149189 71149525 EP300 UCSC Txn Factor no Conserved 71146498 2691 108153860
chr15 71149193 71149423 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2695 108153861
chr15 71149194 71149198 YY1 TRANSFAC yes 71146498 2696 70554452
chr15 71149204 71149548 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2706 108153862
chr15 71149207 71149487 JUND UCSC Txn Factor no Conserved 71146498 2709 108153863
chr15 71149207 71149487 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 71146498 2709 108153864
chr15 71149220 71149456 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2722 108153865
chr15 71149231 71149249 IRF2 JASPAR yes 71146498 2733 70554453
chr15 71149232 71149253 IRF1 JASPAR yes 71146498 2734 70554454
chr15 71149234 71149249 STAT2 JASPAR yes 71146498 2736 70554455
chr15 71149235 71149404 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 71146498 2737 108153866
chr15 71149236 71149248 IRF1 JASPAR yes 71146498 2738 70554456
chr15 71149236 71149250 IRF7 JASPAR yes 71146498 2738 70554457
chr15 71149236 71149250 IRF8 JASPAR yes 71146498 2738 70554458
chr15 71149237 71149593 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2739 108153867
chr15 71149242 71149247 H4TF1 TRANSFAC yes 71146498 2744 70554459
chr15 71149244 71149259 HSF1 JASPAR yes 71146498 2746 70554460
chr15 71149244 71149265 ZNF263 JASPAR yes 71146498 2746 70554461
chr15 71149245 71149258 HSF1 JASPAR yes 71146498 2747 70554462
chr15 71149245 71149258 HSF2 JASPAR yes 71146498 2747 70554463
chr15 71149245 71149258 HSF4 JASPAR yes 71146498 2747 70554464
chr15 71149254 71149564 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71146498 2756 108153868
chr15 71149258 71149269 EBF1 JASPAR yes 71146498 2760 70554465
chr15 71149259 71149265 MZF1 JASPAR yes 71146498 2761 70554466
chr15 71149259 71149429 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2761 108153869
chr15 71149267 71149443 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 71146498 2769 108153870
chr15 71149277 71149282 ETS2 TRANSFAC yes 71146498 2779 70554467
chr15 71149284 71149302 ESR1 JASPAR yes 71146498 2786 70554468
chr15 71149304 71149308 NFE TRANSFAC yes 71146498 2806 70554469
chr15 71149309 71149435 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2811 108153871
chr15 71149309 71149465 JUN UCSC Txn Factor no Conserved 71146498 2811 108153872
chr15 71149345 71149355 EVX1 JASPAR yes 71146498 2847 70554470
chr15 71149345 71149355 EVX2 JASPAR yes 71146498 2847 70554471
chr15 71149357 71149522 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 71146498 2859 108153873
chr15 71149364 71149373 SRY JASPAR yes 71146498 2866 70554472
chr15 71149366 71149384 RARA JASPAR yes 71146498 2868 70554473
chr15 71149372 71149387 JUND JASPAR yes 71146498 2874 70554474
chr15 71149373 71149386 NR2F1 JASPAR yes 71146498 2875 70554475
chr15 71149375 71149390 JUND JASPAR yes 71146498 2877 70554476
chr15 71149376 71149389 JUN JASPAR yes 71146498 2878 70554477
chr15 71149377 71149385 CREB1 JASPAR yes 71146498 2879 70554478
chr15 71149391 71149400 HIC2 JASPAR yes 71146498 2893 70554479
chr15 71149391 71149401 NFIA JASPAR yes 71146498 2893 70554480
chr15 71149392 71149401 NFIX JASPAR yes 71146498 2894 70554481
chr15 71149393 71149399 NFIC JASPAR yes 71146498 2895 70554482
chr15 71149397 71149412 PRDM1 JASPAR yes 71146498 2899 70554483
chr15 71149397 71149412 STAT2 JASPAR yes 71146498 2899 70554484
chr15 71149398 71149412 STAT1 JASPAR yes 71146498 2900 70554485
chr15 71149403 71150461 ZBTB33 GTRD no Lung (A549) 71146498 2905 108153874
chr15 71149419 71149426 MEIS1 JASPAR yes 71146498 2921 70554486
chr15 71149419 71149427 MEIS2 JASPAR yes 71146498 2921 70554487
chr15 71149419 71149427 MEIS3 JASPAR yes 71146498 2921 70554488
chr15 71149428 71149432 YY1 TRANSFAC yes 71146498 2930 70554489
SNPs associated with LARP6[ENSG00000166173.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr15 70551201 rs140210293 C T 572662 Heart 0.383183 4066279
chr15 71901228 rs4354882 A G 754730 Heart 0.171939 4077911
chr15 71041833 rs2113444 C T 82030 Ovary 0.001903 4070813
chr15 70232054 rs140173553 G C 891809 Liver 0.33986 4062983
chr15 71083063 rs12594507 C T 40800 Stomach 0.0464173 4071261
Details of LARP6[ENSG00000166173.9]
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Genomic Location chr15:71123863-71146498[-]
TSS 71146498
Gene Name LARP6
Ensembl ID ENSG00000166173.9
ENTREZID 55323
Uniprot
Q9BRS8
Protein Name
La-related protein 6
Expression levels of LARP6[ENSG00000166173.9]
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