EnhancerDB
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Enhancers that regulate RFNG[ENSG00000169733.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 79925685 79926075 vista26430 80009707 83632
VISTA
chr17 79942701 79942868 vista26431 80009707 66839
VISTA
chr17 79946865 79952395 enh17448 80009707 57312
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Stomach Placenta Breast Thyroid Pancreas Thymus Heart
chr17 79949658 79950000 vista26432 80009707 59707
VISTA
chr17 79950743 79950987 vista26433 80009707 58720
VISTA
chr17 79955085 79966579 enh17449 80009707 43128
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung (PC-9) Bone (Osteoblast) Stomach Muscle (A673) Placenta Muscle (Myoblast) Breast Pancreas (Panc1) Uterus Epithelial (MCF-7)
chr17 79958827 79959194 vista26434 80009707 50513
VISTA
chr17 79968705 79972855 enh92760 80009707 36852
Liver (HepG2)
chr17 79975885 79980035 enh4644 80009707 29672
Blood (Karpas-422)
chr17 79979263 79979824 vista26435 80009707 29883
VISTA
chr17 80029941 80030069 vista26436 80009707 20234
VISTA
chr17 80031109 80035304 enh60693 80009707 21402
Blood (OCI-LY7)
chr17 80052713 80052821 vista26437 80009707 43006
VISTA
chr17 80056613 80056910 vista26438 80009707 46906
VISTA
chr17 80058005 80064135 enh4645 80009707 48298
Prostate (PC-3) Blood (Karpas-422)
chr17 80060759 80061000 vista26439 80009707 51052
VISTA
chr17 80066063 80066430 vista26440 80009707 56356
VISTA
chr17 80068190 80068440 vista26441 80009707 58483
VISTA
chr17 80068913 80069274 vista26442 80009707 59206
VISTA
chr17 80072285 80082435 enh48080 80009707 62578
Bone Marrow (K562) Liver (HepG2) Blood (T-cell) Bone (Osteoblast) Peripheral Blood (MM.1S) Thymus Stomach
chr17 80079695 80079832 vista26443 80009707 69988
VISTA
chr17 80097485 80101635 enh17450 80009707 87778
Placenta
chr17 80104775 80104822 vista26444 80009707 95068
VISTA
Transcript facotrs that regulate RFNG[ENSG00000169733.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with RFNG[ENSG00000169733.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 80927649 rs4986088 C T 917942 Esophagus 0.109177 5126510
chr17 79336797 rs8080594 A G 668981 Heart 0.382443 5112788
chr17 80340803 rs117705122 G A 331096 Spleen 0.230659 5121636
chr17 79013903 rs72851886 G A 991875 Ovary 0.0340337 5109052
chr17 79838724 rs28854867 T C 167054 Uterus 0.325164 5117087
chr17 80999386 rs9902836 T C 989679 Liver 0.0976861 5126843
chr17 79363825 rs144533752 G A 641953 Lung 0.30411 5113194
chr17 80305107 rs146371157 CAGAG C 295400 Stomach 0.260606 5121274
Details of RFNG[ENSG00000169733.7]
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Genomic Location chr17:80005778-80009707[-]
TSS 80009707
Gene Name RFNG
Ensembl ID ENSG00000169733.7
ENTREZID 5986
Uniprot
F5H3H7
Q9Y644
Q8N9R1
Protein Name
Beta-1,3-N-acetylglucosaminyltransferase radical fringe
RFNG protein
Radical fringe homolog
Expression levels of RFNG[ENSG00000169733.7]
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