EnhancerDB
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Enhancers that regulate GCNT4[ENSG00000176928.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr5 74228765 74233895 enh48953 74326724 92829
Liver (HepG2) Brain (SK-N-MC) Blood (T-cell) Muscle (A673) Pancreas Thymus Stomach
chr5 74234905 74239055 enh55328 74326724 87669
Large Intestine
chr5 74241825 74256015 enh22361 74326724 70709
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Astrocyte Stomach Placenta Lung (PC-9) Pancreas Kidney
chr5 74260505 74274735 enh48954 74326724 51989
Blood (T-cell) Thymus Large Intestine Stomach
chr5 74285540 74290952 enh59494 74326724 35772
Pancreas Skin (Keratinocyte) Prostate (PC-3) Epithelial (MCF-7)
chr5 74300850 74307595 enh71803 74326724 19129
Neural Stem Cells (H9) Brain (SK-N-MC)
chr5 74313905 74321875 enh88935 74326724 4849
Epithelial (MCF-7) Lung (PC-9) Pancreas Blood (T-cell) Stomach
chr5 74331005 74340655 enh22362 74326724 4281
Placenta Epithelial (MCF-7)
chr5 74342265 74361315 enh22363 74326724 15541
Bone Marrow (K562) Cervix (HeLa-S3) Blood (T-cell) Astrocyte Bone (Osteoblast) Placenta Peripheral Blood (MM.1S) Pancreas Pancreas (Panc1) Uterus Thymus Stomach
chr5 74353522 74353651 vista48066 74326724 26798
VISTA
chr5 74355814 74356040 vista48067 74326724 29090
VISTA
chr5 74365305 74370155 enh111154 74326724 38581
Cervix (HeLa-S3)
chr5 74382540 74394110 enh59495 74326724 55816
Skin (Keratinocyte) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Lung (PC-9)
Transcript facotrs that regulate GCNT4[ENSG00000176928.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr5 74321731 74321743 FOXI1 JASPAR yes 74326724 4981 63457004
chr5 74321739 74321745 SOX10 JASPAR yes 74326724 4979 63457005
chr5 74321745 74321755 MNX1 JASPAR yes 74326724 4969 63457006
chr5 74321751 74321755 TEAD2 TRANSFAC yes 74326724 4969 63457007
chr5 74321751 74321756 TBP TRANSFAC yes 74326724 4968 63457008
chr5 74321751 74321757 TFIID TRANSFAC yes 74326724 4967 63457009
chr5 74321755 74321761 HiNF-A TRANSFAC yes 74326724 4963 63457010
chr5 74321772 74321776 YY1 TRANSFAC yes 74326724 4948 63457011
chr5 74321787 74321793 PEA3 TRANSFAC yes 74326724 4931 63457012
chr5 74321788 74321796 FEV JASPAR yes 74326724 4928 63457013
chr5 74321813 74321818 ETS2 TRANSFAC yes 74326724 4906 63457014
chr5 74321836 74321847 ETV2 JASPAR yes 74326724 4877 63457015
chr5 74321837 74321847 ERF JASPAR yes 74326724 4877 63457016
chr5 74321837 74321847 ERG JASPAR yes 74326724 4877 63457017
chr5 74321837 74321847 ETS1 JASPAR yes 74326724 4877 63457018
chr5 74321837 74321847 FLI1 JASPAR yes 74326724 4877 63457019
chr5 74321838 74321846 FEV JASPAR yes 74326724 4878 63457020
chr5 74321852 74321857 H4TF1 TRANSFAC yes 74326724 4867 63457021
chr5 74331036 74331046 BARHL2 JASPAR yes 74326724 4312 63457022
chr5 74331049 74331058 VENTX JASPAR yes 74326724 4325 63457023
chr5 74331052 74331056 YY1 TRANSFAC yes 74326724 4328 63457024
chr5 74331056 74331066 MSC JASPAR yes 74326724 4332 63457025
chr5 74331070 74331073 MYB TRANSFAC yes 74326724 4346 63457026
chr5 74331083 74331092 NFIX JASPAR yes 74326724 4359 63457027
chr5 74331084 74331090 NFIC JASPAR yes 74326724 4360 63457028
chr5 74331108 74331114 TCF1 TRANSFAC yes 74326724 4384 63457029
chr5 74331116 74331129 ZBTB18 JASPAR yes 74326724 4392 63457030
chr5 74331127 74331132 ETS2 TRANSFAC yes 74326724 4403 63457031
chr5 74331138 74331143 ETS2 TRANSFAC yes 74326724 4414 63457032
chr5 74331164 74331185 ZNF263 JASPAR yes 74326724 4440 63457033
chr5 74331169 74331176 SPIB JASPAR yes 74326724 4445 63457034
chr5 74331169 74331179 GABPA JASPAR yes 74326724 4445 63457035
chr5 74331169 74331190 ZNF263 JASPAR yes 74326724 4445 63457036
chr5 74331172 74331193 ZNF263 JASPAR yes 74326724 4448 63457037
chr5 74331180 74331198 RARA JASPAR yes 74326724 4456 63457038
chr5 74331215 74331227 TEAD1 JASPAR yes 74326724 4491 63457039
chr5 74331216 74331236 TP53 JASPAR yes 74326724 4492 63457040
chr5 74331234 74331245 STAT3 JASPAR yes 74326724 4510 63457041
chr5 74331238 74331253 SCRT1 JASPAR yes 74326724 4514 63457042
chr5 74331239 74331254 AR JASPAR yes 74326724 4515 63457043
chr5 74331250 74331264 PLAG1 JASPAR yes 74326724 4526 63457044
chr5 74331252 74331271 REST JASPAR yes 74326724 4528 63457045
chr5 74331252 74331273 ZNF263 JASPAR yes 74326724 4528 63457046
chr5 74331253 74331257 LFA1 TRANSFAC yes 74326724 4529 63457047
chr5 74331259 74331264 TFAP2A TRANSFAC yes 74326724 4535 63457048
chr5 74331259 74331265 MZF1 JASPAR yes 74326724 4535 63457049
chr5 74331259 74331280 ZNF263 JASPAR yes 74326724 4535 63457050
chr5 74331261 74331282 ZNF263 JASPAR yes 74326724 4537 63457051
chr5 74331263 74331276 ELF1 JASPAR yes 74326724 4539 63457052
chr5 74331266 74331273 SPIB JASPAR yes 74326724 4542 63457053
chr5 74331342 74331357 LEF1 JASPAR yes 74326724 4618 63457054
chr5 74331346 74331352 LEF1 TRANSFAC yes 74326724 4622 63457055
chr5 74331346 74331352 TCF4 TRANSFAC yes 74326724 4622 63457056
chr5 74331358 74331362 YY1 TRANSFAC yes 74326724 4634 63457057
chr5 74331384 74331395 HOXC13 JASPAR yes 74326724 4660 63457058
chr5 74331427 74331438 DUX4 JASPAR yes 74326724 4703 63457059
chr5 74331471 74331479 MGA JASPAR yes 74326724 4747 63457060
chr5 74331471 74331479 TBX15 JASPAR yes 74326724 4747 63457061
chr5 74331471 74331479 TBX1 JASPAR yes 74326724 4747 63457062
chr5 74331471 74331479 TBX4 JASPAR yes 74326724 4747 63457063
chr5 74331471 74331479 TBX5 JASPAR yes 74326724 4747 63457064
chr5 74331475 74331483 NR4A2 JASPAR yes 74326724 4751 63457065
chr5 74331476 74331490 RXRB JASPAR yes 74326724 4752 63457066
chr5 74331476 74331490 RXRG JASPAR yes 74326724 4752 63457067
chr5 74331476 74331491 NR2C2 JASPAR yes 74326724 4752 63457068
chr5 74331571 74331575 LFA1 TRANSFAC yes 74326724 4847 63457069
chr5 74331576 74331587 YY2 JASPAR yes 74326724 4852 63457070
chr5 74331577 74331589 YY1 JASPAR yes 74326724 4853 63457071
chr5 74331580 74331586 YY1 JASPAR yes 74326724 4856 63457072
chr5 74331585 74331591 TCF4 TRANSFAC yes 74326724 4861 63457073
chr5 74331591 74331602 CEBPA JASPAR yes 74326724 4867 63457074
chr5 74331624 74331634 NFATC3 JASPAR yes 74326724 4900 63457075
chr5 74331626 74331633 NFATC2 JASPAR yes 74326724 4902 63457076
chr5 74331668 74331688 TP63 JASPAR yes 74326724 4944 63457077
chr5 74331669 74331687 TP53 JASPAR yes 74326724 4945 63457078
chr5 74331670 74331685 TP53 JASPAR yes 74326724 4946 63457079
chr5 74331672 74331681 THAP1 JASPAR yes 74326724 4948 63457080
chr5 74331676 74331691 SCRT1 JASPAR yes 74326724 4952 63457081
chr5 74331678 74331691 SCRT2 JASPAR yes 74326724 4954 63457082
chr5 74331708 74331729 ZNF263 JASPAR yes 74326724 4984 63457083
chr5 74331710 74331724 SPIC JASPAR yes 74326724 4986 63457084
chr5 74331717 74331721 YY1 TRANSFAC yes 74326724 4993 63457085
chr5 74331717 74331728 CEBPB JASPAR yes 74326724 4993 63457086
SNPs associated with GCNT4[ENSG00000176928.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr5 73509422 rs290721 G A,C 813867 Esophagus 0.123525 8307392
chr5 74344313 rs73125245 A G 17589 Esophagus 0.0116659 8313498
chr5 74349230 rs76636990 G A 22506 Esophagus 0.00559449 8313563
chr5 74349230 rs76636990 G A 22506 Heart 0.000243872 8313563
chr5 75136883 rs12054759 A G 810159 Breast 0.269608 8315593
chr5 73839502 rs716353 G A,C,T 483787 Spleen 0.399668 8310421
chr5 74349230 rs76636990 G A 22506 Ovary 0.0251321 8313563
chr5 74349230 rs76636990 G A 22506 Lung 0.00302535 8313563
chr5 74340327 rs7714420 A C,T 13603 Adrenal 0.000643441 8313467
Details of GCNT4[ENSG00000176928.4]
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Genomic Location chr5:74323289-74326724[-]
TSS 74326724
Gene Name GCNT4
Ensembl ID ENSG00000176928.4
ENTREZID 51301
Uniprot
Q9P109
Protein Name
Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
Expression levels of GCNT4[ENSG00000176928.4]
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