EnhancerDB
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Enhancers that regulate CLCNKA[ENSG00000186510.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 16241025 16248229 enh26554 16345370 97141
Prostate (PC-3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast)
chr1 16248725 16253475 enh11542 16345370 91895
Prostate (PC-3) Astrocyte Placenta Lung (PC-9) Epithelial (MCF-7)
chr1 16272606 16295457 enh83 16345370 49913
Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Colon (HCT116) Adrenal Blood (Karpas-422) Muscle (Myoblast) Uterus Thymus Heart
chr1 16276028 16276482 vista505 16345370 68888
VISTA
chr1 16277350 16278224 vista506 16345370 67146
VISTA
chr1 16291784 16292062 vista507 16345370 53308
VISTA
chr1 16292565 16293101 vista508 16345370 52269
VISTA
chr1 16310225 16314375 enh78964 16345370 30995
Prostate (PC-3)
chr1 16335305 16339455 enh11543 16345370 5915
Placenta
chr1 16339360 16339596 vista509 16345370 5774
VISTA
chr1 16339773 16339933 vista510 16345370 5437
VISTA
chr1 16342592 16343008 vista511 16345370 2362
VISTA
chr1 16364376 16364458 vista512 16345370 19006
VISTA
chr1 16366462 16366839 vista513 16345370 21092
VISTA
chr1 16366857 16367156 vista514 16345370 21487
VISTA
chr1 16389145 16397135 enh49668 16345370 43775
Liver (HepG2) Large Intestine Esophagus Stomach Pancreas Heart
chr1 16399845 16411190 enh49669 16345370 54475
Cervix (HeLa-S3) Prostate (RWPE1) Large Intestine Esophagus Heart Stomach
chr1 16401814 16401932 vista515 16345370 56444
VISTA
chr1 16413464 16423075 enh26555 16345370 68094
Prostate (PC-3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Breast Pancreas Heart
chr1 16434153 16452566 enh26556 16345370 88783
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Ovary Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Thyroid Lung (PC-9) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Epithelial (MCF-7)
chr1 16438237 16438733 vista516 16345370 92867
VISTA
chr1 16439002 16439355 vista517 16345370 93632
VISTA
chr1 16442572 16442804 vista518 16345370 97202
VISTA
Transcript facotrs that regulate CLCNKA[ENSG00000186510.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 16342337 16343056 ZNF274 GTRD no Bone Marrow (K562) 16345370 2314 107802212
chr1 16342602 16342606 LFA1 TRANSFAC yes 16345370 2764 118238209
chr1 16342611 16342615 LFA1 TRANSFAC yes 16345370 2755 118238210
chr1 16342617 16342626 THAP1 JASPAR yes 16345370 2744 118238211
chr1 16342634 16342645 NRF1 JASPAR yes 16345370 2725 118238212
chr1 16342638 16342653 NR2C2 JASPAR yes 16345370 2717 118238213
chr1 16342641 16342647 SP1 TRANSFAC yes 16345370 2723 118238214
chr1 16342641 16342651 SP1 JASPAR yes 16345370 2719 118238215
chr1 16342659 16342676 ZNF410 JASPAR yes 16345370 2694 118238216
chr1 16342661 16342676 AR JASPAR yes 16345370 2694 118238217
chr1 16342661 16342678 NR3C1 JASPAR yes 16345370 2692 118238218
chr1 16342661 16342678 NR3C2 JASPAR yes 16345370 2692 118238219
chr1 16342687 16342692 SP1 TRANSFAC yes 16345370 2678 118238220
chr1 16342688 16342702 JUN JASPAR yes 16345370 2668 118238221
chr1 16342691 16342702 JUNB JASPAR yes 16345370 2668 118238222
chr1 16342691 16342702 NFE2L2 JASPAR yes 16345370 2668 118238223
chr1 16342692 16342703 FOS JASPAR yes 16345370 2667 118238224
chr1 16342692 16342703 FOSL1 JASPAR yes 16345370 2667 118238225
chr1 16342692 16342703 JUND JASPAR yes 16345370 2667 118238226
chr1 16342693 16342704 FOSL2 JASPAR yes 16345370 2666 118238227
chr1 16342693 16342704 JUNB JASPAR yes 16345370 2666 118238228
chr1 16342693 16342707 JUN JASPAR yes 16345370 2663 118238229
chr1 16342698 16342714 GLIS1 JASPAR yes 16345370 2656 118238230
chr1 16342699 16342713 GLIS2 JASPAR yes 16345370 2657 118238231
chr1 16342703 16342715 ZBTB7C JASPAR yes 16345370 2655 118238232
chr1 16342704 16342714 ZNF740 JASPAR yes 16345370 2656 118238233
chr1 16342720 16342732 HES5 JASPAR yes 16345370 2638 118238234
chr1 16342720 16342732 HES7 JASPAR yes 16345370 2638 118238235
chr1 16342728 16342743 RUNX2 JASPAR yes 16345370 2627 118238236
chr1 16342737 16342752 ESR2 JASPAR yes 16345370 2618 118238237
chr1 16342776 16342781 SP1 TRANSFAC yes 16345370 2589 118238238
chr1 16342786 16342792 ZNF354C JASPAR yes 16345370 2578 118238239
chr1 16342791 16342803 TEAD1 JASPAR yes 16345370 2567 118238240
chr1 16342796 16342817 ZNF263 JASPAR yes 16345370 2553 118238241
chr1 16342802 16342812 MZF1 JASPAR yes 16345370 2558 118238242
chr1 16342806 16342811 ETS2 TRANSFAC yes 16345370 2559 118238243
chr1 16342817 16342831 EBF1 JASPAR yes 16345370 2539 118238244
chr1 16342819 16342830 EBF1 JASPAR yes 16345370 2540 118238245
chr1 16342824 16342838 PLAG1 JASPAR yes 16345370 2532 118238246
chr1 16342843 16342849 ESR1 TRANSFAC yes 16345370 2521 118238247
chr1 16342845 16342849 ESR1 TRANSFAC yes 16345370 2521 118238248
chr1 16342850 16342854 H4TF2 TRANSFAC yes 16345370 2516 118238249
chr1 16342850 16342871 REST JASPAR yes 16345370 2499 118238250
chr1 16342858 16342877 REST JASPAR yes 16345370 2493 118238251
chr1 16342878 16342893 RFX5 JASPAR yes 16345370 2477 118238252
chr1 16342879 16342883 NFE TRANSFAC yes 16345370 2487 118238253
chr1 16342887 16342891 LFA1 TRANSFAC yes 16345370 2479 118238254
chr1 16342892 16342897 SP1 TRANSFAC yes 16345370 2473 118238255
chr1 16342915 16342936 REST JASPAR yes 16345370 2434 118238256
chr1 16342919 16342930 EBF1 JASPAR yes 16345370 2440 118238257
chr1 16342972 16342990 ESR2 JASPAR yes 16345370 2380 118238258
chr1 16342973 16342988 ESR2 JASPAR yes 16345370 2382 118238259
chr1 16342978 16342991 NR2F1 JASPAR yes 16345370 2379 118238260
chr1 16342980 16342991 ESRRA JASPAR yes 16345370 2379 118238261
chr1 16342980 16342991 ESRRB JASPAR yes 16345370 2379 118238262
chr1 16342997 16343008 NRF1 JASPAR yes 16345370 2362 118238263
chr1 16342998 16343003 SP1 TRANSFAC yes 16345370 2367 118238264
chr1 16342999 16343004 SP1 TRANSFAC yes 16345370 2366 118238265
SNPs associated with CLCNKA[ENSG00000186510.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 16335827 rs34840873 T C 9543 Heart 8.22305e-06 109209
chr1 16339313 rs10927886 C G 6057 Spleen 0.00103772 109253
chr1 16337509 rs1763607 G A 7861 Ovary 5.12883e-06 109233
chr1 16626150 rs6603851 A G,T 265605 Uterus 0.145372 111436
chr1 16818225 rs156856 T A 457680 Liver 0.377481 112455
chr1 16363925 rs12038479 G T 3380 Lung 0.127446 109318
chr1 16343254 rs1739843 T C 2116 Stomach 8.49844e-06 109304
Details of CLCNKA[ENSG00000186510.7]
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Genomic Location chr1:16345370-16360545[+]
TSS 16345370
Gene Name CLCNKA
Ensembl ID ENSG00000186510.7
ENTREZID 1187
Uniprot
P51800
Protein Name
Chloride channel protein ClC-Ka
Expression levels of CLCNKA[ENSG00000186510.7]
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