EnhancerDB
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Enhancers that regulate RDM1[ENSG00000187456.9]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr17 34156025 34160175 enh17118 34257777 97602
Placenta
chr17 34160214 34160648 vista24543 34257777 97129
VISTA
chr17 34172825 34179275 enh52482 34257777 78502
Prostate (RWPE1) Large Intestine Pancreas Spleen Neural Stem Cells (H9) Blood (T-cell)
chr17 34203240 34203349 vista24544 34257777 54428
VISTA
chr17 34213485 34236135 enh17119 34257777 21642
Skin (Keratinocyte) Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Blood (T-cell) Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr17 34217615 34217957 vista24545 34257777 39820
VISTA
chr17 34219004 34219427 vista24546 34257777 38350
VISTA
chr17 34219582 34220299 vista24547 34257777 37478
VISTA
chr17 34223301 34223445 vista24548 34257777 34332
VISTA
chr17 34225359 34225619 vista24549 34257777 32158
VISTA
chr17 34227790 34227961 vista24550 34257777 29816
VISTA
chr17 34237465 34244415 enh52483 34257777 13362
Bone Marrow (K562) Large Intestine
chr17 34258601 34258728 vista24551 34257777 824
VISTA
chr17 34294605 34303338 enh52484 34257777 36828
Skin (Keratinocyte) Liver (HepG2) Prostate (RWPE1) Large Intestine Liver Pancreas Spleen Stomach
chr17 34316205 34320395 enh52485 34257777 58428
Liver (HepG2) Peripheral Blood (MM.1S) Large Intestine
chr17 34327568 34327611 vista24552 34257777 69791
VISTA
chr17 34332125 34338615 enh92718 34257777 74348
Liver (HepG2) Peripheral Blood (MM.1S)
chr17 34356145 34363455 enh4370 34257777 98368
Large Intestine Blood (Karpas-422)
Transcript facotrs that regulate RDM1[ENSG00000187456.9]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr17 34257383 34258886 ZBTB33 GTRD no Brain (SK-N-SH) 34257777 394 108251403
chr17 34258609 34258614 SP1 TRANSFAC yes 34257777 832 21226283
chr17 34258621 34258629 FEV JASPAR yes 34257777 844 21226284
chr17 34258622 34258640 MAFF JASPAR yes 34257777 845 21226285
chr17 34258624 34258635 NRL JASPAR yes 34257777 847 21226286
chr17 34258624 34258639 MAFK JASPAR yes 34257777 847 21226287
chr17 34258624 34258642 NFYA JASPAR yes 34257777 847 21226288
chr17 34258639 34258645 ESR1 TRANSFAC yes 34257777 862 21226289
chr17 34258639 34258653 RXRB JASPAR yes 34257777 862 21226290
chr17 34258639 34258653 RXRG JASPAR yes 34257777 862 21226291
chr17 34258641 34258645 ESR1 TRANSFAC yes 34257777 864 21226292
chr17 34258647 34258661 BATF3 JASPAR yes 34257777 870 21226293
chr17 34258679 34258694 MAFK JASPAR yes 34257777 902 21226294
chr17 34258704 34258709 SP1 TRANSFAC yes 34257777 927 21226295
SNPs associated with RDM1[ENSG00000187456.9], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr17 34236746 rs11653282 C T 8324 Esophagus 5.85837e-08 4846138
Details of RDM1[ENSG00000187456.9]
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Genomic Location chr17:34245070-34257777[-]
TSS 34257777
Gene Name RDM1
Ensembl ID ENSG00000187456.9
ENTREZID 201299
Uniprot
Q8NG50
Protein Name
RAD52 motif-containing protein 1
Expression levels of RDM1[ENSG00000187456.9]
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