EnhancerDB
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Enhancers that regulate TCEA3[ENSG00000204219.5]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr1 23653225 23659875 enh78979 23751233 91358
Prostate (PC-3) Epithelial (MCF-7)
chr1 23664745 23668895 enh125 23751233 82338
Blood (Karpas-422)
chr1 23669506 23669991 vista739 23751233 81242
VISTA
chr1 23696605 23707075 enh11609 23751233 44158
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Thyroid Muscle (Myoblast) Breast Pancreas (Panc1) Uterus Epithelial (MCF-7)
chr1 23721090 23721462 vista740 23751233 29771
VISTA
chr1 23724929 23732663 enh61812 23751233 18570
Esophagus Muscle (A673) Heart
chr1 23736121 23740301 enh26583 23751233 10932
Astrocyte Bone (Osteoblast) Ovary Stomach
chr1 23742225 23746375 enh92034 23751233 4858
Liver (HepG2)
chr1 23748973 23749126 vista741 23751233 2107
VISTA
chr1 23769065 23778715 enh11610 23751233 17832
Placenta Stomach
chr1 23778586 23778784 vista742 23751233 27353
VISTA
chr1 23783925 23789795 enh92035 23751233 32692
Liver (HepG2)
chr1 23794065 23807912 enh11611 23751233 42832
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Esophagus Astrocyte Liver Bone (Osteoblast) Stomach Placenta Lung (PC-9) Muscle (Myoblast) Uterus Heart
chr1 23821600 23825916 enh61813 23751233 70367
Esophagus Spleen Prostate (RWPE1) Liver
chr1 23839318 23839630 vista743 23751233 88085
VISTA
chr1 23849183 23849405 vista744 23751233 97950
VISTA
chr1 23850565 23856203 enh74162 23751233 99332
Muscle (A673) Colon (HCT116)
Transcript facotrs that regulate TCEA3[ENSG00000204219.5]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr1 23746248 23746267 CTCF JASPAR yes 23751233 4966 27433485
chr1 23746259 23746279 PPARG JASPAR yes 23751233 4954 27433486
chr1 23746261 23746278 ESR1 JASPAR yes 23751233 4955 27433487
chr1 23746261 23746279 ESR2 JASPAR yes 23751233 4954 27433488
chr1 23746277 23746285 NR4A2 JASPAR yes 23751233 4948 27433489
chr1 23746277 23746290 EOMES JASPAR yes 23751233 4943 27433490
chr1 23746280 23746290 SREBF1 JASPAR yes 23751233 4943 27433491
chr1 23746280 23746290 SREBF2 JASPAR yes 23751233 4943 27433492
chr1 23746281 23746289 MGA JASPAR yes 23751233 4944 27433493
chr1 23746301 23746320 PAX5 JASPAR yes 23751233 4913 27433494
chr1 23746305 23746316 NFE2L2 JASPAR yes 23751233 4917 27433495
chr1 23746326 23746341 FOXP1 JASPAR yes 23751233 4892 27433496
chr1 23746328 23746348 RREB1 JASPAR yes 23751233 4885 27433497
chr1 23746331 23746343 IRF1 JASPAR yes 23751233 4890 27433498
chr1 23746331 23746346 FOXP1 JASPAR yes 23751233 4887 27433499
chr1 23746333 23746353 RREB1 JASPAR yes 23751233 4880 27433500
chr1 23746335 23746350 FOXP1 JASPAR yes 23751233 4883 27433501
chr1 23746336 23746347 FOXA1 JASPAR yes 23751233 4886 27433502
chr1 23746336 23746351 FOXA1 JASPAR yes 23751233 4882 27433503
chr1 23746337 23746349 FOXC2 JASPAR yes 23751233 4884 27433504
chr1 23746338 23746350 FOXI1 JASPAR yes 23751233 4883 27433505
chr1 23746350 23746360 MSC JASPAR yes 23751233 4873 27433506
chr1 23746358 23746369 RUNX1 JASPAR yes 23751233 4864 27433507
chr1 23746366 23746370 TEAD2 TRANSFAC yes 23751233 4863 27433508
chr1 23748645 23749201 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 23751233 2032 107802419
chr1 23748994 23749008 GLIS3 JASPAR yes 23751233 2225 118249329
chr1 23749012 23749027 STAT1 JASPAR yes 23751233 2206 118249330
chr1 23749013 23749027 SPI1 JASPAR yes 23751233 2206 118249331
chr1 23749014 23749025 STAT1 JASPAR yes 23751233 2208 118249332
chr1 23749014 23749027 ELF1 JASPAR yes 23751233 2206 118249333
chr1 23749015 23749027 EHF JASPAR yes 23751233 2206 118249334
chr1 23749015 23749027 ELF1 JASPAR yes 23751233 2206 118249335
chr1 23749015 23749027 ELF4 JASPAR yes 23751233 2206 118249336
chr1 23749015 23749028 ELF3 JASPAR yes 23751233 2205 118249337
chr1 23749016 23749027 ELF5 JASPAR yes 23751233 2206 118249338
chr1 23749016 23749027 ETV2 JASPAR yes 23751233 2206 118249339
chr1 23749017 23749027 ELK1 JASPAR yes 23751233 2206 118249340
chr1 23749017 23749027 ELK3 JASPAR yes 23751233 2206 118249341
chr1 23749017 23749027 ERF JASPAR yes 23751233 2206 118249342
chr1 23749017 23749027 ERG JASPAR yes 23751233 2206 118249343
chr1 23749017 23749027 ETS1 JASPAR yes 23751233 2206 118249344
chr1 23749017 23749027 ETV1 JASPAR yes 23751233 2206 118249345
chr1 23749017 23749027 ETV3 JASPAR yes 23751233 2206 118249346
chr1 23749017 23749027 ETV4 JASPAR yes 23751233 2206 118249347
chr1 23749017 23749027 ETV6 JASPAR yes 23751233 2206 118249348
chr1 23749017 23749027 FEV JASPAR yes 23751233 2206 118249349
chr1 23749017 23749027 FLI1 JASPAR yes 23751233 2206 118249350
chr1 23749017 23749028 FLI1 JASPAR yes 23751233 2205 118249351
chr1 23749018 23749026 EHF JASPAR yes 23751233 2207 118249352
chr1 23749018 23749026 FEV JASPAR yes 23751233 2207 118249353
chr1 23749019 23749026 SPI1 JASPAR yes 23751233 2207 118249354
chr1 23749036 23749051 RFX5 JASPAR yes 23751233 2182 118249355
chr1 23749041 23749044 MYB TRANSFAC yes 23751233 2189 118249356
chr1 23749052 23749057 SP1 TRANSFAC yes 23751233 2176 118249357
chr1 23749053 23749058 SP1 TRANSFAC yes 23751233 2175 118249358
chr1 23749057 23749061 H4TF2 TRANSFAC yes 23751233 2172 118249359
chr1 23749060 23749075 PRDM1 JASPAR yes 23751233 2158 118249360
chr1 23749101 23749106 SP1 TRANSFAC yes 23751233 2127 118249361
chr1 23749115 23749124 HIC2 JASPAR yes 23751233 2109 118249362
SNPs associated with TCEA3[ENSG00000204219.5], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr1 23780639 rs10917382 G A 29406 Esophagus 5.95837e-09 158785
chr1 23926768 rs141727000 G A 175535 Esophagus 0.180757 159958
chr1 23159866 rs144697668 C T 547688 Esophagus 0.141384 155169
chr1 23710475 rs2298632 C T 0 Heart 0.0043811 158411
chr1 23710475 rs2298632 C T 0 Heart 3.02523e-08 158411
chr1 23785760 rs7551124 C T 34527 Spleen 0.141272 158801
chr1 23207890 rs397796947 C CA 499664 Ovary 0.282834 155697
chr1 23183130 rs4654824 C T 524424 Stomach 0.425393 155423
Details of TCEA3[ENSG00000204219.5]
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Genomic Location chr1:23707554-23751233[-]
TSS 23751233
Gene Name TCEA3
Ensembl ID ENSG00000204219.5
ENTREZID 6920
Uniprot
O75764
B4DUM4
Protein Name
Transcription elongation factor A protein 3
Expression levels of TCEA3[ENSG00000204219.5]
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