EnhancerDB
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Enhancers that regulate HLA-C[ENSG00000204525.10]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 31138660 31146287 enh46102 31239907 93620
Muscle (Myoblast) Muscle (Myotube) Embryonic Stem Cell Line (H1-hESC)
chr6 31140737 31140986 vista51563 31239907 98921
VISTA
chr6 31153665 31160515 enh61375 31239907 79392
Blood (OCI-LY7) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Stomach
chr6 31167025 31180175 enh9031 31239907 59732
Bone Marrow (K562) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr6 31187711 31199482 enh61376 31239907 40425
Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas Heart Stomach
chr6 31206945 31216075 enh84146 31239907 23832
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Lung (PC-9) Epithelial (MCF-7)
chr6 31240851 31241006 vista51564 31239907 944
VISTA
chr6 31273825 31277975 enh49077 31239907 33918
Thymus
chr6 31275830 31276119 vista51565 31239907 35923
VISTA
chr6 31276281 31276390 vista51566 31239907 36374
VISTA
chr6 31298559 31303041 enh61377 31239907 58652
Blood (OCI-LY7)
chr6 31316205 31321614 enh61378 31239907 76298
Blood (T-cell) Blood (OCI-LY7)
chr6 31326609 31326903 vista51567 31239907 86702
VISTA
chr6 31332385 31336895 enh100494 31239907 92478
Uterus
chr6 31334700 31334921 vista51568 31239907 94793
VISTA
Transcript facotrs that regulate HLA-C[ENSG00000204525.10]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 31240856 31240870 SPI1 JASPAR yes 31239907 949 70345664
chr6 31240867 31240883 POU4F2 JASPAR yes 31239907 960 70345665
chr6 31240867 31240883 POU4F3 JASPAR yes 31239907 960 70345666
chr6 31240869 31240883 POU4F1 JASPAR yes 31239907 962 70345667
chr6 31240876 31240885 POU3F4 JASPAR yes 31239907 969 70345668
chr6 31240887 31240901 MTF1 JASPAR yes 31239907 980 70345669
chr6 31240894 31240908 POU4F1 JASPAR yes 31239907 987 70345670
chr6 31240894 31240910 POU4F2 JASPAR yes 31239907 987 70345671
chr6 31240894 31240910 POU4F3 JASPAR yes 31239907 987 70345672
chr6 31240899 31240903 YY1 TRANSFAC yes 31239907 992 70345673
chr6 31240900 31240910 HOXB13 JASPAR yes 31239907 993 70345674
chr6 31240904 31240908 YY1 TRANSFAC yes 31239907 997 70345675
chr6 31240910 31240926 SOX8 JASPAR yes 31239907 1003 70345676
chr6 31240915 31240930 MEF2A JASPAR yes 31239907 1008 70345677
chr6 31240916 31240931 MEF2C JASPAR yes 31239907 1009 70345678
chr6 31240919 31240923 YY1 TRANSFAC yes 31239907 1012 70345679
chr6 31240922 31240933 NFIL3 JASPAR yes 31239907 1015 70345680
chr6 31240927 31240930 MYB TRANSFAC yes 31239907 1020 70345681
chr6 31240938 31240944 TBP TRANSFAC yes 31239907 1031 70345682
chr6 31240949 31240965 E2F2 JASPAR yes 31239907 1042 70345683
chr6 31240960 31240964 YY1 TRANSFAC yes 31239907 1053 70345684
SNPs associated with HLA-C[ENSG00000204525.10], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 31239378 rs1131123 T A,G 0 Esophagus 6.28745e-48 8955104
chr6 31239378 rs1131123 T A,G 0 Esophagus 7.2216e-29 8955104
chr6 31239279 rs9264665 T C 0 Esophagus 4.92893e-44 8955094
chr6 31239378 rs1131123 T A,G 0 Heart 6.27226e-42 8955104
chr6 31239378 rs1131123 T A,G 0 Heart 6.29673e-39 8955104
chr6 31237950 rs9264623 T C 0 Pancreas 2.03556e-31 8954994
chr6 31239378 rs1131123 T A,G 0 Breast 9.35656e-21 8955104
chr6 31239378 rs1131123 T A,G 0 Spleen 2.63528e-18 8955104
chr6 31237723 rs9264610 G A 0 Ovary 7.96351e-17 8954959
chr6 31239378 rs1131123 T A,G 0 Uterus 6.45261e-09 8955104
chr6 31239378 rs1131123 T A,G 0 Thyroid 1.05348e-55 8955104
chr6 31239378 rs1131123 T A,G 0 Liver 2.63614e-23 8955104
chr6 31239378 rs1131123 T A,G 0 Lung 9.75122e-64 8955104
chr6 31239378 rs1131123 T A,G 0 Stomach 7.00517e-20 8955104
chr6 31239378 rs1131123 T A,G 0 Adrenal 1.01723e-14 8955104
Details of HLA-C[ENSG00000204525.10]
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Genomic Location chr6:31236526-31239907[-]
TSS 31239907
Gene Name HLA-C
Ensembl ID ENSG00000204525.10
ENTREZID 3107
Uniprot
Q95HC2
Q6R739
P10321
O19617
Protein Name
Cw-6 alpha chain
alpha chain
HLA class I
HLA class I antigen
HLA class I histocompatibility antigen
MHC Class I antigen
MHC clas I antigen
MHC class 1 antigen
MHC class I antigen
Truncated MHC class I antigen
Expression levels of HLA-C[ENSG00000204525.10]
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