EnhancerDB
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Enhancers that regulate GCNT6[ENSG00000205318.3]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 10527425 10550312 enh8944 10633993 83681
Large Intestine Blood (OCI-LY7) Blood (GM12878) Blood (Karpas-422) Neural Stem Cells (H9) Heart
chr6 10552532 10552740 vista50772 10633993 81253
VISTA
chr6 10565425 10570115 enh55628 10633993 63878
Large Intestine Lung (A549)
chr6 10571645 10585903 enh66162 10633993 48090
Pancreas Neural Stem Cells (H9) Stomach Heart
chr6 10587786 10588136 vista50773 10633993 45857
VISTA
chr6 10589491 10589864 vista50774 10633993 44129
VISTA
chr6 10592093 10592386 vista50775 10633993 41607
VISTA
chr6 10592242 10601915 enh8945 10633993 32078
Prostate (PC-3) Esophagus Astrocyte Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Heart
chr6 10598796 10598919 vista50776 10633993 35074
VISTA
chr6 10607919 10616215 enh66163 10633993 17778
Stomach Prostate (PC-3) Epithelial (MCF-7) Heart
chr6 10638745 10645794 enh8946 10633993 4752
Blood (OCI-LY7) Bone Marrow (K562) Blood (Karpas-422)
chr6 10655946 10656230 vista50777 10633993 21953
VISTA
chr6 10689045 10693195 enh110262 10633993 55052
Stomach
chr6 10711885 10716435 enh106173 10633993 77892
Peripheral Blood (MM.1S)
chr6 10719904 10720278 vista50778 10633993 85911
VISTA
chr6 10731526 10737416 enh23012 10633993 97533
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Epithelial (MCF-7)
Transcript facotrs that regulate GCNT6[ENSG00000205318.3]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr6 10638764 10638775 FOSL2 JASPAR yes 10633993 4771 99842990
chr6 10638799 10638802 MYB TRANSFAC yes 10633993 4806 99842991
chr6 10638823 10638839 SOX4 JASPAR yes 10633993 4830 99842992
chr6 10638850 10638856 SOX10 JASPAR yes 10633993 4857 99842993
chr6 10638856 10638867 DMRT3 JASPAR yes 10633993 4863 99842994
chr6 10638858 10638863 GATA2 JASPAR yes 10633993 4865 99842995
chr6 10638863 10638867 YY1 TRANSFAC yes 10633993 4870 99842996
chr6 10638907 10638913 SOX10 JASPAR yes 10633993 4914 99842997
chr6 10638913 10638924 DMRT3 JASPAR yes 10633993 4920 99842998
chr6 10638915 10638920 GATA2 JASPAR yes 10633993 4922 99842999
chr6 10638920 10638924 YY1 TRANSFAC yes 10633993 4927 99843000
chr6 10638934 10638947 SCRT2 JASPAR yes 10633993 4941 99843001
chr6 10638934 10638949 SCRT1 JASPAR yes 10633993 4941 99843002
chr6 10638948 10638951 MYB TRANSFAC yes 10633993 4955 99843003
chr6 10638961 10638979 IRF2 JASPAR yes 10633993 4968 99843004
chr6 10638973 10638982 SOX9 JASPAR yes 10633993 4980 99843005
chr6 10638975 10638984 SRY JASPAR yes 10633993 4982 99843006
chr6 10638977 10638985 FOXO3 JASPAR yes 10633993 4984 99843007
chr6 10638977 10638987 NFATC3 JASPAR yes 10633993 4984 99843008
chr6 10638983 10638987 YY1 TRANSFAC yes 10633993 4990 99843009
chr6 10638989 10638994 GATA2 JASPAR yes 10633993 4996 99843010
SNPs associated with GCNT6[ENSG00000205318.3], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 11405291 rs11970100 G A 757790 Stomach 0.333151 8830693
Details of GCNT6[ENSG00000205318.3]
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Genomic Location chr6:10633993-10647501[+]
TSS 10633993
Gene Name GCNT6
Ensembl ID ENSG00000205318.3
ENTREZID 644378
Uniprot
Protein Name
Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 6
Expression levels of GCNT6[ENSG00000205318.3]
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