EnhancerDB
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Enhancers that regulate LCMT1[ENSG00000205629.7]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr16 25014985 25024215 enh16610 25123050 98835
Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Esophagus Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Placenta Heart
chr16 25025498 25025977 vista22211 25123050 97073
VISTA
chr16 25036065 25069195 enh3955 25123050 53855
Bone Marrow (K562) Astrocyte Blood (Karpas-422) Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
chr16 25049848 25050165 vista22212 25123050 72885
VISTA
chr16 25060889 25061147 vista22213 25123050 61903
VISTA
chr16 25062814 25063119 vista22214 25123050 59931
VISTA
chr16 25069852 25070174 vista22215 25123050 52876
VISTA
chr16 25070325 25080915 enh3956 25123050 42135
Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Placenta Adrenal Blood (Karpas-422) Muscle (Myoblast) Spleen Muscle (Myotube) Uterus Thymus Heart
chr16 25072371 25072507 vista22216 25123050 50543
VISTA
chr16 25083031 25087689 enh60598 25123050 35361
Blood (OCI-LY7)
chr16 25089385 25093535 enh91102 25123050 29515
Bone Marrow (K562)
chr16 25098845 25107395 enh47939 25123050 15655
Peripheral Blood (MM.1S) Blood (T-cell) Thymus Large Intestine
chr16 25103942 25104115 vista22217 25123050 18935
VISTA
chr16 25104411 25104695 vista22218 25123050 18355
VISTA
chr16 25121755 25122029 vista22219 25123050 1021
VISTA
chr16 25127985 25133175 enh16611 25123050 4935
Placenta Epithelial (MCF-7)
chr16 25143805 25149075 enh31745 25123050 20755
Astrocyte Epithelial (MCF-7)
chr16 25158142 25170015 enh31746 25123050 35092
Astrocyte Colon (HCT116) Adrenal Muscle (Myoblast) Muscle (Myotube) Uterus
chr16 25180845 25184995 enh88228 25123050 57795
Pancreas
chr16 25195745 25211732 enh16612 25123050 72695
Prostate (PC-3) Placenta Colon (HCT116) Pancreas (Panc1) Uterus
chr16 25215505 25219655 enh52240 25123050 92455
Large Intestine
Transcript facotrs that regulate LCMT1[ENSG00000205629.7]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr16 25121579 25122290 ZNF274 GTRD no Blood (GM12878) 25123050 760 108189761
chr16 25121647 25122183 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 25123050 867 108189762
chr16 25121690 25122340 ZNF274 GTRD no Liver (HepG2) 25123050 710 108189763
chr16 25121720 25122298 ZNF274 GTRD no Liver (HepG2) 25123050 752 108189764
chr16 25121756 25121760 TEAD2 TRANSFAC yes 25123050 1290 49358827
chr16 25121756 25121761 TBP TRANSFAC yes 25123050 1289 49358828
chr16 25121756 25121762 TFIID TRANSFAC yes 25123050 1288 49358829
chr16 25121760 25121771 DUX4 JASPAR yes 25123050 1279 49358830
chr16 25121761 25121772 CEBPB JASPAR yes 25123050 1278 49358831
chr16 25121761 25121774 ATF4 JASPAR yes 25123050 1276 49358832
chr16 25121762 25121773 CEBPA JASPAR yes 25123050 1277 49358833
chr16 25121762 25121775 JUN JASPAR yes 25123050 1275 49358834
chr16 25121762 25122260 ZNF274 GTRD no Liver (HepG2) 25123050 790 108189765
chr16 25121764 25122040 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 25123050 1010 108189766
chr16 25121770 25122006 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 25123050 1044 108189767
chr16 25121792 25121798 MZF1 JASPAR yes 25123050 1252 49358835
chr16 25121812 25121820 FOXL1 JASPAR yes 25123050 1230 49358836
chr16 25121820 25121824 YY1 TRANSFAC yes 25123050 1226 49358837
chr16 25121847 25121997 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 25123050 1053 108189768
chr16 25121873 25121885 IRF1 JASPAR yes 25123050 1165 49358838
chr16 25121876 25121891 IRF9 JASPAR yes 25123050 1159 49358839
chr16 25121886 25121896 MAX JASPAR yes 25123050 1154 49358840
chr16 25121887 25121897 BHLHE40 JASPAR yes 25123050 1153 49358841
chr16 25121889 25121894 MYC TRANSFAC yes 25123050 1156 49358842
chr16 25121889 25121894 USF1 TRANSFAC yes 25123050 1156 49358843
chr16 25121889 25121894 USF2 TRANSFAC yes 25123050 1156 49358844
chr16 25121903 25121913 TFE3 JASPAR yes 25123050 1137 49358845
chr16 25121904 25121911 USF1 JASPAR yes 25123050 1139 49358846
chr16 25121905 25121910 MYC TRANSFAC yes 25123050 1140 49358847
chr16 25121905 25121910 USF1 TRANSFAC yes 25123050 1140 49358848
chr16 25121905 25121910 USF2 TRANSFAC yes 25123050 1140 49358849
chr16 25121918 25121925 PEA3 TRANSFAC yes 25123050 1125 49358850
chr16 25121933 25121954 ZNF263 JASPAR yes 25123050 1096 49358851
chr16 25121935 25121956 ZNF263 JASPAR yes 25123050 1094 49358852
chr16 25121936 25121957 ZNF263 JASPAR yes 25123050 1093 49358853
chr16 25121939 25121960 ZNF263 JASPAR yes 25123050 1090 49358854
chr16 25121947 25121958 E2F6 JASPAR yes 25123050 1092 49358855
chr16 25121950 25121960 SP1 JASPAR yes 25123050 1090 49358856
chr16 25121988 25121996 NR4A2 JASPAR yes 25123050 1054 49358857
chr16 25121990 25122400 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 25123050 650 108189769
chr16 25121995 25121999 H1TF2 TRANSFAC yes 25123050 1051 49358858
chr16 25121995 25121999 NFE TRANSFAC yes 25123050 1051 49358859
chr16 25121995 25121999 SRF TRANSFAC yes 25123050 1051 49358860
chr16 25121999 25122004 GATA2 JASPAR yes 25123050 1046 49358861
chr16 25122000 25122021 IRF1 JASPAR yes 25123050 1029 49358862
chr16 25122006 25122027 IRF1 JASPAR yes 25123050 1023 49358863
chr16 25122008 25122023 FOXP1 JASPAR yes 25123050 1027 49358864
chr16 25122012 25122027 FOXP1 JASPAR yes 25123050 1023 49358865
chr16 25122013 25122025 FOXC2 JASPAR yes 25123050 1025 49358866
chr16 25122015 25122019 YY1 TRANSFAC yes 25123050 1031 49358867
chr16 25128010 25128014 LFA1 TRANSFAC yes 25123050 4960 10105014
chr16 25128013 25128025 YY1 JASPAR yes 25123050 4963 10105015
chr16 25128034 25128054 RREB1 JASPAR yes 25123050 4984 10105016
chr16 25128035 25128050 FOXP1 JASPAR yes 25123050 4985 10105017
chr16 25128036 25128051 FOXP1 JASPAR yes 25123050 4986 10105018
chr16 25128036 25128057 IRF1 JASPAR yes 25123050 4986 10105019
chr16 25128037 25128052 FOXP1 JASPAR yes 25123050 4987 10105020
chr16 25128037 25128058 IRF1 JASPAR yes 25123050 4987 10105021
chr16 25128038 25128053 FOXP1 JASPAR yes 25123050 4988 10105022
chr16 25128038 25128059 IRF1 JASPAR yes 25123050 4988 10105023
chr16 25128039 25128054 FOXP1 JASPAR yes 25123050 4989 10105024
chr16 25128039 25128060 IRF1 JASPAR yes 25123050 4989 10105025
chr16 25128040 25128055 FOXP1 JASPAR yes 25123050 4990 10105026
chr16 25128040 25128061 IRF1 JASPAR yes 25123050 4990 10105027
chr16 25128041 25128056 FOXP1 JASPAR yes 25123050 4991 10105028
chr16 25128041 25128062 IRF1 JASPAR yes 25123050 4991 10105029
chr16 25128042 25128057 FOXP1 JASPAR yes 25123050 4992 10105030
chr16 25128046 25128061 FOXP1 JASPAR yes 25123050 4996 10105031
SNPs associated with LCMT1[ENSG00000205629.7], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr16 25120246 rs112597022 G C 2804 Esophagus 0.0608354 4386265
chr16 25201724 rs142557548 A C 12172 Esophagus 0.367088 4386755
chr16 25068754 rs7199361 T C,G 54296 Heart 0.2974 4385673
chr16 24844098 rs12596691 T C 278952 Spleen 0.0913532 4384209
Details of LCMT1[ENSG00000205629.7]
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Genomic Location chr16:25123050-25189552[+]
TSS 25123050
Gene Name LCMT1
Ensembl ID ENSG00000205629.7
ENTREZID 51451
Uniprot
Q9UIC8
Protein Name
Leucine carboxyl methyltransferase 1
Expression levels of LCMT1[ENSG00000205629.7]
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