EnhancerDB
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Enhancers that regulate VPS52[ENSG00000223501.4]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr6 33158336 33158731 vista51633 33239824 81093
VISTA
chr6 33159164 33159383 vista51634 33239824 80441
VISTA
chr6 33181288 33181504 vista51635 33239824 58320
VISTA
chr6 33192626 33197643 enh72223 33239824 42181
Neural Stem Cells (H9)
chr6 33212985 33217775 enh9057 33239824 22049
Uterus Blood (Karpas-422)
chr6 33216178 33216307 vista51636 33239824 23517
VISTA
chr6 33221308 33230855 enh38948 33239824 8969
Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Esophagus Astrocyte Colon (HCT116) Lung (PC-9) Pancreas (Panc1) Uterus
chr6 33278605 33284515 enh9058 33239824 38781
Uterus Blood (Karpas-422)
chr6 33308645 33317035 enh49078 33239824 68821
Bone Marrow (K562) Prostate (PC-3) Blood (T-cell) Bone (Osteoblast) Blood (OCI-LY7) Stomach Peripheral Blood (MM.1S) Lung (PC-9) Uterus Thymus Epithelial (MCF-7)
chr6 33311865 33311969 vista51637 33239824 72041
VISTA
chr6 33312244 33312406 vista51638 33239824 72420
VISTA
chr6 33321745 33334495 enh23157 33239824 81921
Bone Marrow (K562) Esophagus Stomach Placenta Thyroid Lung (PC-9) Epithelial (MCF-7)
chr6 33338553 33346195 enh59610 33239824 98729
Bone Marrow (K562) Skin (Keratinocyte) Cervix (HeLa-S3) Brain (SK-N-SH) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Liver Thyroid Uterus Lung (PC-9) Neural Stem Cells (H9) Blood (T-cell) Stomach
Transcript facotrs that regulate VPS52[ENSG00000223501.4]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
SNPs associated with VPS52[ENSG00000223501.4], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
chr6 33244716 rs463302 G C 4892 Esophagus 0.000361991 8972557
chr6 32621980 rs17613347 T C 596069 Ovary 0.456301 8966905
chr6 33248174 rs213215 G A 8350 Thyroid 0.00205816 8972594
chr6 32409781 rs6931646 C T 808268 Liver 0.304265 8961561
chr6 32609789 rs1048134 A G 608260 Stomach 0.18316 8966308
Details of VPS52[ENSG00000223501.4]
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Genomic Location chr6:33218049-33239824[-]
TSS 33239824
Gene Name VPS52
Ensembl ID ENSG00000223501.4
ENTREZID 6293
Uniprot
Q4VXZ2
Q8N1B4
B3KMF7
B4DS44
Protein Name
Vacuolar protein sorting 52
Vacuolar protein sorting-associated protein 52 homolog
Expression levels of VPS52[ENSG00000223501.4]
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