EnhancerDB
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Enhancers that regulate HOXC4[ENSG00000273266.1]
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Chrom. Start End Enhancer ID TSS of gene Distance between enhancer and TSS Tissues that enhancer appears More
chr12 54372759 54373189 vista13549 54447661 74472
VISTA
chr12 54384983 54385161 vista13550 54447661 62500
VISTA
chr12 54386194 54392720 enh89659 54447661 54941
Bone (Osteoblast) Prostate (RWPE1)
chr12 54391907 54392298 vista13551 54447661 55363
VISTA
chr12 54400493 54400742 vista13552 54447661 46919
VISTA
chr12 54400746 54401119 vista13553 54447661 46542
VISTA
chr12 54405914 54417704 enh86112 54447661 29957
Colon (HCT116) Bone (Osteoblast) Prostate (RWPE1)
chr12 54411861 54412590 vista13554 54447661 35071
VISTA
chr12 54412238 54415445 vista336 54447661 32216
VISTA
chr12 54413422 54413659 vista13555 54447661 34002
VISTA
chr12 54413878 54414161 vista13556 54447661 33500
VISTA
chr12 54415475 54415883 vista13557 54447661 31778
VISTA
chr12 54416528 54417002 vista13558 54447661 30659
VISTA
chr12 54424968 54425277 vista13559 54447661 22384
VISTA
chr12 54426638 54427789 vista337 54447661 19872
VISTA
chr12 54428725 54440370 enh14745 54447661 7291
Prostate (RWPE1) Blood (OCI-LY7) Placenta Muscle (Myoblast) Muscle (Myotube) Stomach
chr12 54433983 54434162 vista13560 54447661 13499
VISTA
chr12 54444172 54444407 vista13561 54447661 3254
VISTA
chr12 54446030 54446105 vista13562 54447661 1556
VISTA
chr12 54464175 54472036 enh43745 54447661 16514
Muscle (Myotube) Neural Stem Cells (H9) Bone (Osteoblast)
chr12 54472705 54478630 enh51214 54447661 25044
Uterus Blood (T-cell) Large Intestine
chr12 54479885 54484035 enh109555 54447661 32224
Stomach
chr12 54518825 54522975 enh98969 54447661 71164
Uterus
chr12 54524885 54538328 enh14746 54447661 77224
Brain (SK-N-SH) Brain (SK-N-MC) Large Intestine Bone (Osteoblast) Placenta Muscle (Myotube) Stomach
Transcript facotrs that regulate HOXC4[ENSG00000273266.1]
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Chrom. Start End TF name Source Predicted site? Tissue TSS of gene Distance between TFBS and gene id More
chr12 54443852 54444913 ZNF274 GTRD no Bone Marrow (K562) 54447661 2748 108036984
chr12 54443866 54444652 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3009 108036985
chr12 54443872 54444855 AR GTRD no Prostate (PC-3) 54447661 2806 108036986
chr12 54443896 54444836 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2825 108036987
chr12 54443918 54444743 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2918 108036988
chr12 54443942 54444767 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2894 108036989
chr12 54443953 54444791 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2870 108036990
chr12 54443976 54444695 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2966 108036991
chr12 54444063 54444484 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3177 108036992
chr12 54444093 54444544 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3117 108036993
chr12 54444122 54444762 ZNF143 GTRD no Epithelial (MCF-7) 54447661 2899 108036994
chr12 54444141 54444651 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3010 108036995
chr12 54444148 54444661 ZBTB33 GTRD no Lung (A549) 54447661 3000 108036996
chr12 54444151 54444739 ZNF274 GTRD no Liver (HepG2) 54447661 2922 108036997
chr12 54444156 54444540 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3121 108036998
chr12 54444157 54444672 ZBTB33 GTRD no Lung (A549) 54447661 2989 108036999
chr12 54444166 54444549 ZNF274 GTRD no Liver (HepG2) 54447661 3112 108037000
chr12 54444176 54444188 IRF1 JASPAR yes 54447661 3473 82411669
chr12 54444177 54444192 MEF2C JASPAR yes 54447661 3469 82411670
chr12 54444177 54444590 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3071 108037001
chr12 54444178 54444193 MEF2A JASPAR yes 54447661 3468 82411671
chr12 54444179 54444191 FOXC2 JASPAR yes 54447661 3470 82411672
chr12 54444179 54444191 MEF2A JASPAR yes 54447661 3470 82411673
chr12 54444179 54444191 MEF2B JASPAR yes 54447661 3470 82411674
chr12 54444179 54444191 MEF2D JASPAR yes 54447661 3470 82411675
chr12 54444180 54444190 MEF2A JASPAR yes 54447661 3471 82411676
chr12 54444181 54444195 FOXF2 JASPAR yes 54447661 3466 82411677
chr12 54444181 54444195 ONECUT2 JASPAR yes 54447661 3466 82411678
chr12 54444181 54444195 ONECUT3 JASPAR yes 54447661 3466 82411679
chr12 54444181 54444196 FOXP1 JASPAR yes 54447661 3465 82411680
chr12 54444182 54444197 FOXA1 JASPAR yes 54447661 3464 82411681
chr12 54444183 54444194 FOXB1 JASPAR yes 54447661 3467 82411682
chr12 54444183 54444194 FOXC1 JASPAR yes 54447661 3467 82411683
chr12 54444183 54444195 FOXC2 JASPAR yes 54447661 3466 82411684
chr12 54444184 54444196 FOXI1 JASPAR yes 54447661 3465 82411685
chr12 54444191 54444205 RORA JASPAR yes 54447661 3456 82411686
chr12 54444198 54444219 ZNF263 JASPAR yes 54447661 3442 82411687
chr12 54444199 54444203 LFA1 TRANSFAC yes 54447661 3458 82411688
chr12 54444204 54444622 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3039 108037002
chr12 54444208 54444463 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3198 108037003
chr12 54444209 54444226 RXRA JASPAR yes 54447661 3435 82411689
chr12 54444210 54444231 ZNF263 JASPAR yes 54447661 3430 82411690
chr12 54444214 54444617 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3044 108037004
chr12 54444221 54444225 LFA1 TRANSFAC yes 54447661 3436 82411691
chr12 54444226 54444606 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3055 108037005
chr12 54444227 54444240 NFKB1 JASPAR yes 54447661 3421 82411692
chr12 54444227 54444240 NFKB2 JASPAR yes 54447661 3421 82411693
chr12 54444230 54444251 REST JASPAR yes 54447661 3410 82411694
chr12 54444231 54444250 REST JASPAR yes 54447661 3411 82411695
chr12 54444233 54444658 ZNF274 GTRD no Liver (HepG2) 54447661 3003 108037006
chr12 54444239 54444258 PAX5 JASPAR yes 54447661 3403 82411696
chr12 54444246 54444261 ZIC3 JASPAR yes 54447661 3400 82411697
chr12 54444248 54444259 E2F1 JASPAR yes 54447661 3402 82411698
chr12 54444249 54444254 SP1 TRANSFAC yes 54447661 3407 82411699
chr12 54444249 54444260 E2F4 JASPAR yes 54447661 3401 82411700
chr12 54444249 54444260 E2F6 JASPAR yes 54447661 3401 82411701
chr12 54444250 54444255 SP1 TRANSFAC yes 54447661 3406 82411702
chr12 54444261 54444271 MZF1 JASPAR yes 54447661 3390 82411703
chr12 54444269 54444275 HiNF-A TRANSFAC yes 54447661 3386 82411704
chr12 54444310 54444610 ZNF143 GTRD no Epithelial (MCF-7) 54447661 3051 108037007
chr12 54444331 54444341 SP1 JASPAR yes 54447661 3320 82411705
chr12 54444333 54444343 ZNF740 JASPAR yes 54447661 3318 82411706
chr12 54444337 54444343 SP1 TRANSFAC yes 54447661 3318 82411707
chr12 54444337 54444347 SP1 JASPAR yes 54447661 3314 82411708
chr12 54444342 54444352 ALX3 JASPAR yes 54447661 3309 82411709
chr12 54444342 54444352 EN2 JASPAR yes 54447661 3309 82411710
chr12 54444342 54444352 ESX1 JASPAR yes 54447661 3309 82411711
chr12 54444342 54444352 GBX2 JASPAR yes 54447661 3309 82411712
chr12 54444342 54444352 GSX1 JASPAR yes 54447661 3309 82411713
chr12 54444342 54444352 GSX2 JASPAR yes 54447661 3309 82411714
chr12 54444342 54444352 LBX2 JASPAR yes 54447661 3309 82411715
chr12 54444342 54444352 LHX2 JASPAR yes 54447661 3309 82411716
chr12 54444343 54444347 H1TF2 TRANSFAC yes 54447661 3314 82411717
chr12 54444343 54444347 NFE TRANSFAC yes 54447661 3314 82411718
chr12 54444343 54444347 SRF TRANSFAC yes 54447661 3314 82411719
chr12 54444343 54444351 BARX1 JASPAR yes 54447661 3310 82411720
chr12 54444343 54444351 BSX JASPAR yes 54447661 3310 82411721
chr12 54444343 54444351 DLX6 JASPAR yes 54447661 3310 82411722
chr12 54444343 54444351 ISX JASPAR yes 54447661 3310 82411723
chr12 54444343 54444351 LBX1 JASPAR yes 54447661 3310 82411724
chr12 54444343 54444351 LHX9 JASPAR yes 54447661 3310 82411725
chr12 54444343 54444351 MSX1 JASPAR yes 54447661 3310 82411726
chr12 54444343 54444351 MSX2 JASPAR yes 54447661 3310 82411727
chr12 54444343 54444351 NKX6-2 JASPAR yes 54447661 3310 82411728
chr12 54444343 54444351 PRRX1 JASPAR yes 54447661 3310 82411729
chr12 54444343 54444351 RAX2 JASPAR yes 54447661 3310 82411730
chr12 54444343 54444351 SHOX JASPAR yes 54447661 3310 82411731
chr12 54444343 54444351 UNCX JASPAR yes 54447661 3310 82411732
chr12 54444351 54444632 ZNF274 GTRD no Blood (GM12878) 54447661 3029 108037008
chr12 54444358 54444366 ISL2 JASPAR yes 54447661 3295 82411733
chr12 54444384 54444399 MEF2C JASPAR yes 54447661 3262 82411734
chr12 54444387 54444391 YY1 TRANSFAC yes 54447661 3270 82411735
chr12 54445279 54447350 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 54447661 311 108037009
chr12 54445699 54446295 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 54447661 1366 108037010
chr12 54445699 54446295 TCF7L2 UCSC Txn Factor no Conserved 54447661 1366 108037011
chr12 54445936 54446232 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 54447661 1429 108037012
chr12 54445962 54446298 POL24H8 ENCODE Uniform TFBS no Brain (SK-N-MC) 54447661 1363 108037013
chr12 54446035 54446050 ZBTB33 JASPAR yes 54447661 1611 82411736
chr12 54446051 54446061 HOXC10 JASPAR yes 54447661 1600 82411737
chr12 54446051 54446061 HOXD11 JASPAR yes 54447661 1600 82411738
chr12 54446051 54446062 HOXC11 JASPAR yes 54447661 1599 82411739
chr12 54446051 54446062 HOXD12 JASPAR yes 54447661 1599 82411740
chr12 54446052 54446061 CDX1 JASPAR yes 54447661 1600 82411741
chr12 54446055 54446067 PROX1 JASPAR yes 54447661 1594 82411742
chr12 54446057 54446062 ATF1 TRANSFAC yes 54447661 1599 82411743
chr12 54446071 54446081 HOXA13 JASPAR yes 54447661 1580 82411744
chr12 54446071 54446081 HOXB13 JASPAR yes 54447661 1580 82411745
chr12 54446071 54446081 HOXD13 JASPAR yes 54447661 1580 82411746
chr12 54446073 54446077 TEAD2 TRANSFAC yes 54447661 1584 82411747
chr12 54446073 54446078 TBP TRANSFAC yes 54447661 1583 82411748
chr12 54446073 54446079 TFIID TRANSFAC yes 54447661 1582 82411749
chr12 54446076 54446086 MSC JASPAR yes 54447661 1575 82411750
SNPs associated with HOXC4[ENSG00000273266.1], confirmed by eQTL
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Chrom. Position dbSNP ID Reference Allele Alternative Allele Distance between TSS and SNP Tissue q Value id More
Details of HOXC4[ENSG00000273266.1]
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Genomic Location chr12:54447661-54449814[+]
TSS 54447661
Gene Name HOXC4
Ensembl ID ENSG00000273266.1
ENTREZID 3221
Uniprot
Q86TF7
P09017
A0A024RB51
Protein Name
Homeobox C4
Homeobox protein Hox-C4
Expression levels of HOXC4[ENSG00000273266.1]
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