EnhancerDB
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  3. rs11579231[chr1:171397972]
Enhancers that have rs11579231[chr1:171397972]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs11579231[chr1:171397972]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 21349642
chr1 171397850 171398489 SOX2 GTRD no Neural Stem Cells (H9) 107845396
chr1 171397896 171398201 SOX2 GTRD no Neural Stem Cells (H9) 21349643
chr1 171397915 171398345 SOX2 GTRD no Neural Stem Cells (H9) 21349644
chr1 171397919 171398210 SOX2 GTRD no Neural Stem Cells (H9) 21349645
chr1 171397963 171397972 NKX3-2 JASPAR yes 33079599
chr1 171397963 171397977 PLAG1 JASPAR yes 33079600
Genes associated with rs11579231[chr1:171397972], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More