EnhancerDB
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  3. rs116865877[chr1:171399563]
Enhancers that have rs116865877[chr1:171399563]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 171385965 171412775 enh12367
Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Placenta Lung (PC-9) Muscle (Myoblast) Breast Spleen Muscle (Myotube) Prostate (RWPE1)
Transcript factors that have rs116865877[chr1:171399563]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 171399389 171399813 SOX2 GTRD no Neural Stem Cells (H9) 21349646
chr1 171399563 171399573 GCM2 JASPAR yes 33079788
chr1 171399563 171399574 GCM1 JASPAR yes 33079789
Genes associated with rs116865877[chr1:171399563], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More