EnhancerDB
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  3. rs12942588[chr17:48973032]
Enhancers that have rs12942588[chr17:48973032]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 48954425 48973436 enh32228
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs12942588[chr17:48973032]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 48969932 48973718 ZNF274 GTRD no Liver (HepG2) 21770314
chr17 48970042 48973634 ZNF274 GTRD no Liver (HepG2) 21770315
chr17 48970090 48973147 ZNF274 GTRD no Liver (HepG2) 21770316
chr17 48970092 48973408 ZNF274 GTRD no Liver (HepG2) 21770317
chr17 48970160 48973787 ZNF274 GTRD no Liver (HepG2) 21770321
chr17 48970230 48973595 ZNF274 GTRD no Liver (HepG2) 21770327
chr17 48970599 48973175 ZNF274 GTRD no Liver (HepG2) 21770336
chr17 48970704 48973209 ZNF274 GTRD no Liver (HepG2) 21770340
chr17 48970749 48973180 TCF7L2 GTRD no Colon (HCT116) 21770343
chr17 48970849 48974611 ZNF143 GTRD no Epithelial (MCF-7) 21770348
chr17 48970849 48974611 ZNF143 GTRD no Epithelial (MCF-7) 21770349
chr17 48970958 48973180 TCF7L2 GTRD no Colon (HCT116) 21770356
chr17 48971012 48973062 TCF7L2 GTRD no Colon (HCT116) 21770369
chr17 48971100 48973165 ZNF274 GTRD no Liver (HepG2) 21770377
chr17 48971217 48973613 ZNF274 GTRD no Bone Marrow (K562) 21770396
chr17 48971304 48973097 ZNF143 GTRD no Epithelial (MCF-7) 21770407
chr17 48971613 48973566 ZNF274 GTRD no Bone Marrow (K562) 21770415
chr17 48971662 48973736 ZNF143 GTRD no Epithelial (MCF-7) 21770416
chr17 48971670 48973640 ZNF274 GTRD no Bone Marrow (K562) 21770417
chr17 48971699 48973033 ZNF274 GTRD no Bone Marrow (K562) 21770420
chr17 48971832 48973096 ZNF274 GTRD no Bone Marrow (K562) 21770425
chr17 48971884 48973094 ZNF274 GTRD no Bone Marrow (K562) 21770426
chr17 48971923 48973313 ZNF143 GTRD no Epithelial (MCF-7) 21770427
chr17 48971927 48973221 ZNF143 GTRD no Epithelial (MCF-7) 21770428
chr17 48971928 48973190 ZNF274 GTRD no Cervix (HeLa-S3) 21770429
chr17 48971939 48973193 ZNF143 GTRD no Epithelial (MCF-7) 21770430
chr17 48971946 48973045 ZNF274 GTRD no Liver (HepG2) 21770431
chr17 48971958 48973517 ZNF143 GTRD no Epithelial (MCF-7) 21770432
chr17 48971975 48973158 ZNF143 GTRD no Epithelial (MCF-7) 21770434
chr17 48972001 48973225 ZNF274 GTRD no Bone Marrow (K562) 21770441
chr17 48972009 48973039 ZNF143 GTRD no Epithelial (MCF-7) 21770442
chr17 48972012 48973046 ZNF274 GTRD no Cervix (HeLa-S3) 21770443
chr17 48972022 48973169 ZNF143 GTRD no Epithelial (MCF-7) 21770444
chr17 48972026 48973240 ZNF143 GTRD no Epithelial (MCF-7) 21770445
chr17 48972050 48973164 TCF7L2 GTRD no Colon (HCT116) 21770447
chr17 48972069 48973179 ZNF143 GTRD no Epithelial (MCF-7) 21770451
chr17 48972080 48973045 ZNF143 GTRD no Epithelial (MCF-7) 21770455
chr17 48972089 48973135 ZNF274 GTRD no Liver (HepG2) 21770457
chr17 48972090 48973526 ZNF274 GTRD no Bone Marrow (K562) 21770460
chr17 48972093 48973117 ZNF274 GTRD no Liver (HepG2) 21770461
chr17 48972105 48973054 ZNF274 GTRD no Liver (HepG2) 21770466
chr17 48972105 48973341 TCF7L2 GTRD no Colon (HCT116) 21770467
chr17 48972165 48973174 ZNF143 GTRD no Epithelial (MCF-7) 21770492
chr17 48972172 48973148 ZNF274 GTRD no Liver (HepG2) 21770497
chr17 48972173 48973054 ZNF274 GTRD no Liver (HepG2) 21770498
chr17 48972195 48973090 TCF7L2 GTRD no Colon (HCT116) 21770509
chr17 48972217 48973049 TCF7L2 GTRD no Colon (HCT116) 21770518
chr17 48972225 48973136 ZNF274 GTRD no Liver (HepG2) 21770522
chr17 48972236 48973040 ZNF274 GTRD no Bone Marrow (K562) 21770528
chr17 48972389 48973767 TCF7L2 GTRD no Colon (HCT116) 21770562
chr17 48972888 48973129 ZNF274 GTRD no Bone Marrow (K562) 21770574
chr17 48973023 48973038 FOXP1 JASPAR yes 54730443
chr17 48973024 48973042 SRF JASPAR yes 54730444
chr17 48973030 48973034 YY1 TRANSFAC yes 54730445
Genes associated with rs12942588[chr17:48973032], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More